WormBase Tree Display for Gene: WBGene00022173
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| WBGene00022173 | SMap | S_parent | Sequence | Y71H2AM | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | set-27 | Person_evidence | WBPerson1730 | |||||
| WBPerson268 | |||||||||
| WBPerson632 | |||||||||
| Sequence_name | Y71H2AM.8 | ||||||||
| Molecular_name | Y71H2AM.8 | ||||||||
| Y71H2AM.8.1 | |||||||||
| CE38660 | |||||||||
| Other_name | CELE_Y71H2AM.8 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | set-27 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 03 May 2007 10:33:07 | WBPerson2970 | Name_change | CGC_name | set-27 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | set | ||||||||
| Allele (192) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00091884 | ||||||||
| 00091885 | |||||||||
| 00091886 | |||||||||
| 00091887 | |||||||||
| 00091888 | |||||||||
| 00091889 | |||||||||
| 00091890 | |||||||||
| 00091891 | |||||||||
| 00091892 | |||||||||
| Ortholog (32) | |||||||||
| Paralog | WBGene00022371 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | set-27 encodes a SET domain-containing protein; SET-27 is orthologous to human SETD3 and fission yeast Mug76p, and is paralogous to SET-29 and human SETD4; SET-29 has no obvious function in mass RNAi assays. | Paper_evidence | WBPaper00030864 | |||||
| WBPaper00031075 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 11 Oct 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable histone H3K36 methyltransferase activity; histone H3K4 methyltransferase activity; and transcription coactivator activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Expressed in muscle cell. Is an ortholog of human SETD3 (SET domain containing 3, actin N3(tau)-histidine methyltransferase). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y71H2AM.8 | |||||||
| Corresponding_CDS_history | Y71H2AM.8:wp143 | ||||||||
| Corresponding_transcript | Y71H2AM.8.1 | ||||||||
| Other_sequence (70) | |||||||||
| Associated_feature | WBsf644996 | ||||||||
| WBsf991586 | |||||||||
| WBsf224543 | |||||||||
| WBsf224544 | |||||||||
| WBsf224545 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00058252 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr14374 | ||||||||
| Expr1018857 | |||||||||
| Expr1039774 | |||||||||
| Expr1161671 | |||||||||
| Expr2015772 | |||||||||
| Expr2034005 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (78) | |||||||||
| Interaction | WBInteraction000269937 | ||||||||
| WBInteraction000526158 | |||||||||
| WBInteraction000563301 | |||||||||
| WBInteraction000564274 | |||||||||
| WBInteraction000568175 | |||||||||
| WBInteraction000579678 | |||||||||
| Map_info | Map | III | Position | -10.7941 | Error | 0.014047 | |||
| Positive | Positive_clone | Y71H2AM | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00030864 | ||||||||
| WBPaper00038372 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
