WormBase Tree Display for Gene: WBGene00022224
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| WBGene00022224 | SMap | S_parent | Sequence | Y73B3B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | set-28 | Person_evidence | WBPerson1730 | |||||
| WBPerson268 | |||||||||
| WBPerson632 | |||||||||
| Sequence_name | Y73B3B.2 | ||||||||
| Molecular_name | Y73B3B.2 | ||||||||
| Y73B3B.2.1 | |||||||||
| CE26597 | |||||||||
| Other_name | CELE_Y73B3B.2 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | set-28 | ||||||||
| DB_info | Database | AceView | gene | XA840 | |||||
| WormQTL | gene | WBGene00022224 | |||||||
| WormFlux | gene | WBGene00022224 | |||||||
| NDB | locus_tag | CELE_Y73B3B.2 | |||||||
| NCBI | gene | 190641 | |||||||
| RefSeq | protein | NM_075648.2 | |||||||
| TrEMBL | UniProtAcc | Q95XE0 | |||||||
| UniProt_GCRP | UniProtAcc | Q95XE0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 03 May 2007 10:33:07 | WBPerson2970 | Name_change | CGC_name | set-28 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | set | ||||||||
| Allele (25) | |||||||||
| Strain | WBStrain00033302 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | chrX_pilon.g18234 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Paralog | WBGene00008145 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Concise_description | set-28 encodes a moderately sized (240-residue) SET domain-containing protein with no known non-nematode orthologs; SET-28 54% identity to the SET domain of SET-5, and 93% identity to the SET domain of Y57A10A.1, both much larger proteins and thus not strict paralogs; neither set-28(n4953) nor set-28(RNAi) have any obvious phenotypes. | Paper_evidence | WBPaper00030864 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 11 Oct 2007 00:00:00 | ||||||||
| Automated_description | Expressed in germ line. Is predicted to encode a protein with the following domains: SET domain superfamily and SET domain. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y73B3B.2 | |||||||
| Corresponding_transcript | Y73B3B.2.1 | ||||||||
| Associated_feature | WBsf1003740 | ||||||||
| WBsf1003741 | |||||||||
| WBsf1022087 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00058299 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr14372 | ||||||||
| Expr1014701 | |||||||||
| Expr1161710 | |||||||||
| Microarray_results | 175945_at | ||||||||
| A_12_P104228 | |||||||||
| GPL8673_Y73B3B_2P00235 | |||||||||
| GPL8673_Y73B3B_2P00466 | |||||||||
| GPL9450_Y73B3B.2 | |||||||||
| cea2.d.07329 | |||||||||
| Expression_cluster (69) | |||||||||
| Map_info | Map | X | Position | -20.3944 | |||||
| Positive | Positive_clone | Y73B3B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00030864 | ||||||||
| WBPaper00038372 | |||||||||
| WBPaper00058742 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
