WormBase Tree Display for Gene: WBGene00022253
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| WBGene00022253 | SMap | S_parent | Sequence | Y73B6BL | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | hrpf-2 | Person_evidence | WBPerson6228 | |||||
| WBPerson713 | |||||||||
| Sequence_name | Y73B6BL.33 | ||||||||
| Molecular_name | Y73B6BL.33a | ||||||||
| Y73B6BL.33a.1 | |||||||||
| CE30324 | |||||||||
| Y73B6BL.33b | |||||||||
| CE49418 | |||||||||
| Y73B6BL.33b.1 | |||||||||
| Other_name | CELE_Y73B6BL.33 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | hrpf-2 | ||||||||
| DB_info | Database | AceView | gene | 4H138 | |||||
| WormQTL | gene | WBGene00022253 | |||||||
| WormFlux | gene | WBGene00022253 | |||||||
| NDB | locus_tag | CELE_Y73B6BL.33 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00022253|UniProtKB=Q8MXR2 | |||||||
| family | PTHR13976 | ||||||||
| NCBI | gene | 177398 | |||||||
| RefSeq | protein | NM_171360.5 | |||||||
| NM_001380274.1 | |||||||||
| TrEMBL | UniProtAcc | Q8MXR2 | |||||||
| V6CLR1 | |||||||||
| UniProt_GCRP | UniProtAcc | Q8MXR2 | |||||||
| OMIM | gene | 300610 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 30 Mar 2009 16:33:08 | WBPerson9133 | Name_change | CGC_name | hrpf-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hrpf | ||||||||
| Allele (53) | |||||||||
| Strain | WBStrain00037886 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00084656 | ||||||||
| 00084657 | |||||||||
| 00084658 | |||||||||
| 00084659 | |||||||||
| 00084660 | |||||||||
| 00084661 | |||||||||
| 00126411 | |||||||||
| 00126412 | |||||||||
| Contained_in_operon | CEOP4649 | ||||||||
| Ortholog (57) | |||||||||
| Paralog | WBGene00006367 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00013703 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00020936 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable RNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to be located in nucleoplasm. Predicted to be part of ribonucleoprotein complex. Human ortholog(s) of this gene implicated in Sjogren's syndrome; hepatocellular carcinoma; and syndromic X-linked intellectual disability. Is an ortholog of human GRSF1 (G-rich RNA sequence binding factor 1) and HNRNPF (heterogeneous nuclear ribonucleoprotein F). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0060309 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5042) | ||||
| DOID:12894 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5041) | ||||||
| DOID:684 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5041) | ||||||
| Molecular_info | Corresponding_CDS | Y73B6BL.33a | |||||||
| Y73B6BL.33b | |||||||||
| Corresponding_transcript | Y73B6BL.33a.1 | ||||||||
| Y73B6BL.33b.1 | |||||||||
| Other_sequence | JI169826.1 | ||||||||
| BMC00751_1 | |||||||||
| CBC02136_1 | |||||||||
| CRC00996_1 | |||||||||
| CR02235 | |||||||||
| JI168541.1 | |||||||||
| CBC07624_1 | |||||||||
| Associated_feature | WBsf651844 | ||||||||
| WBsf667969 | |||||||||
| WBsf667970 | |||||||||
| WBsf230149 | |||||||||
| WBsf230150 | |||||||||
| WBsf230151 | |||||||||
| WBsf230152 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00001671 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00058335 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1014809 | ||||||||
| Expr1039813 | |||||||||
| Expr1161745 | |||||||||
| Expr2012602 | |||||||||
| Expr2030838 | |||||||||
| Drives_construct | WBCnstr00024313 | ||||||||
| Construct_product | WBCnstr00024313 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (116) | |||||||||
| Interaction (105) | |||||||||
| Map_info | Map | IV | Position | 3.18005 | Error | 0.003706 | |||
| Positive | Positive_clone | Y73B6BL | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027281 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060270 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
