WormBase Tree Display for Gene: WBGene00022276
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| WBGene00022276 | SMap | S_parent | Sequence | Y74C9A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nlp-40 | Person_evidence | WBPerson242 | |||||
| Sequence_name | Y74C9A.2 | ||||||||
| Molecular_name | Y74C9A.2a | ||||||||
| Y74C9A.2a.1 | |||||||||
| CE24660 | |||||||||
| Y74C9A.2b | |||||||||
| CE49228 | |||||||||
| Y74C9A.2a.2 | |||||||||
| Y74C9A.2a.3 | |||||||||
| Y74C9A.2b.1 | |||||||||
| Other_name | CELE_Y74C9A.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | nlp-40 | ||||||||
| DB_info | Database | AceView | gene | 1A489 | |||||
| WormQTL | gene | WBGene00022276 | |||||||
| WormFlux | gene | WBGene00022276 | |||||||
| NDB | locus_tag | CELE_Y74C9A.2 | |||||||
| NCBI | gene | 171591 | |||||||
| RefSeq | protein | NM_001306277.3 | |||||||
| NM_058259.5 | |||||||||
| SwissProt | UniProtAcc | Q9N4D8 | |||||||
| UniProt_GCRP | UniProtAcc | Q9N4D8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 24 Oct 2005 15:35:58 | WBPerson2970 | Name_change | CGC_name | nlp-40 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nlp | ||||||||
| Allele (87) | |||||||||
| Strain | WBStrain00055086 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00094463 | ||||||||
| 00094464 | |||||||||
| 00094465 | |||||||||
| 00094466 | |||||||||
| 00094467 | |||||||||
| 00094468 | |||||||||
| 00094469 | |||||||||
| 00094470 | |||||||||
| Ortholog (22) | |||||||||
| Structured_description | Concise_description | nlp-40 encodes a neuropeptide-like protein; NLP-40 is secreted by the intestine and mediates the pacemaker function of the intestine that regulates the rhythmic defecation motor program; NLP-40 likely functions with the AEX-2 G protein-coupled receptor, expressed on GABAergic neurons, to regulate GABA release and effect contraction of the enteric muscles. | Paper_evidence | WBPaper00042242 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 18 Aug 2014 00:00:00 | ||||||||
| Automated_description | Predicted to enable neuropeptide receptor binding activity. Involved in neuropeptide signaling pathway and positive regulation of defecation. Located in extracellular space. Expressed in coelomocyte and intestinal cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y74C9A.2a | |||||||
| Y74C9A.2b | |||||||||
| Corresponding_transcript | Y74C9A.2a.1 | ||||||||
| Y74C9A.2a.2 | |||||||||
| Y74C9A.2a.3 | |||||||||
| Y74C9A.2b.1 | |||||||||
| Other_sequence (42) | |||||||||
| Associated_feature | WBsf642990 | ||||||||
| WBsf655728 | |||||||||
| WBsf655803 | |||||||||
| WBsf982367 | |||||||||
| WBsf982368 | |||||||||
| WBsf982369 | |||||||||
| WBsf1009011 | |||||||||
| WBsf1009012 | |||||||||
| WBsf217084 | |||||||||
| Experimental_info | RNAi_result (17) | ||||||||
| Expr_pattern | Expr10799 | ||||||||
| Expr10800 | |||||||||
| Expr16344 | |||||||||
| Expr1025537 | |||||||||
| Expr1039827 | |||||||||
| Expr1161831 | |||||||||
| Expr2014305 | |||||||||
| Expr2032546 | |||||||||
| Drives_construct | WBCnstr00017568 | ||||||||
| WBCnstr00017569 | |||||||||
| WBCnstr00017570 | |||||||||
| WBCnstr00017571 | |||||||||
| WBCnstr00038348 | |||||||||
| WBCnstr00042964 | |||||||||
| Construct_product | WBCnstr00017571 | ||||||||
| WBCnstr00042964 | |||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (178) | |||||||||
| Interaction | WBInteraction000520044 | ||||||||
| WBInteraction000555199 | |||||||||
| WBInteraction000556797 | |||||||||
| Map_info | Map | I | Position | -21.6687 | |||||
| Positive | Positive_clone | Y74C9A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (22) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
