WormBase Tree Display for Gene: WBGene00022400

WBGene00022400 SMap: S_parent: Sequence: Y97E10AR
  Identity: Version: 2
    Name: CGC_name: rpb-9 Person_evidence: WBPerson1787
      Sequence_name: Y97E10AR.5
      Molecular_name: Y97E10AR.5
        Y97E10AR.5.1
        CE26319
      Other_name: Y97E10AR.a Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y97E10AR.5 Accession_evidence: NDB BX284605
      Public_name: rpb-9
    DB_info: Database: AceView gene 5I492
        WormQTL gene WBGene00022400
        WormFlux gene WBGene00022400
        NDB locus_tag CELE_Y97E10AR.5
        Panther gene CAEEL|WormBase=WBGene00022400|UniProtKB=Q965S0
          family PTHR11239
        NCBI gene 179178
        RefSeq protein NM_072661.7
        SwissProt UniProtAcc Q965S0
        TREEFAM TREEFAM_ID TF103032
        UniProt_GCRP UniProtAcc Q965S0
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:05 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 04 Oct 2007 14:17:58 WBPerson2970 Name_change: CGC_name: rpb-9
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rpb
    Allele (22)
    Strain: WBStrain00002414
      WBStrain00036962
    RNASeq_FPKM (74)
    GO_annotation (15)
    Contained_in_operon: CEOP5172
    Ortholog (38)
    Paralog: WBGene00007616 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00022309 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to be involved in maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II; transcription initiation at RNA polymerase II promoter; and transcription-coupled nucleotide-excision repair. Predicted to be located in nucleolus. Predicted to be part of RNA polymerase II, core complex. Is an ortholog of human POLR2I (RNA polymerase II subunit I). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y97E10AR.5
    Corresponding_transcript: Y97E10AR.5.1
    Other_sequence (40)
    Associated_feature: WBsf669137
      WBsf234017
    Transcription_factor: WBTranscriptionFactor000247
      WBTranscriptionFactor000329
  Experimental_info: RNAi_result: WBRNAi00058682 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram450
      Expr1010482
      Expr1039892
      Expr1162102
      Expr2015429
      Expr2033664
    Drives_construct: WBCnstr00003031
      WBCnstr00024253
    Construct_product: WBCnstr00024253
    Microarray_results (16)
    Expression_cluster (83)
    Interaction (182)
  Map_info: Map: V Position: 1.00105 Error: 0.000435
    Positive: Positive_clone: Y97E10AR Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027309
    WBPaper00029038
    WBPaper00038491
    WBPaper00055090
    WBPaper00060788
    WBPaper00060992
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene