WormBase Tree Display for Gene: WBGene00022454
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WBGene00022454 | SMap | S_parent | Sequence | Y110A7A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | trf-2 | |||||||
Sequence_name | Y110A7A.2 | ||||||||
Molecular_name | Y110A7A.2 | ||||||||
Y110A7A.2.1 | |||||||||
CE30308 | |||||||||
Other_name | CELE_Y110A7A.2 | Accession_evidence | NDB | BX284601 | |||||
Public_name | trf-2 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 14 Feb 2018 15:08:42 | WBPerson1983 | Name_change | CGC_name | trf-2 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | trf | ||||||||
Allele (45) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00095134 | ||||||||
Ortholog (29) | |||||||||
Paralog | WBGene00006612 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
Structured_description | Automated_description | Predicted to enable ubiquitin protein ligase binding activity. Human ortholog(s) of this gene implicated in brain disease. Is an ortholog of human TRAF1 (TNF receptor associated factor 1); TRAF3 (TNF receptor associated factor 3); and TRAF5 (TNF receptor associated factor 5). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:936 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12033) | ||||
Molecular_info | Corresponding_CDS | Y110A7A.2 | |||||||
Corresponding_transcript | Y110A7A.2.1 | ||||||||
Associated_feature | WBsf656292 | ||||||||
WBsf217631 | |||||||||
Experimental_info | RNAi_result | WBRNAi00055322 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00004531 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00112692 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1020818 | ||||||||
Expr1158861 | |||||||||
Expr2007014 | |||||||||
Expr2025240 | |||||||||
Microarray_results (18) | |||||||||
Expression_cluster (104) | |||||||||
Map_info | Map | I | Position | -0.34651 | |||||
Positive | Positive_clone | Y110A7A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00055090 | |||||||||
WBPaper00063946 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |