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WormBase Tree Display for Gene: WBGene00023642

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Name Class

WBGene00023642SMapS_parentSequencecb25.fpc0003
IdentityVersion1
NameSequence_nameCBG00197
Molecular_nameCBG00197
CBG00197.1
CBP39533
Other_nameCBG_00197Accession_evidenceNDBHE601409
Public_nameCBG00197
DB_infoDatabaseNDBlocus_tagCBG_00197
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:53WBPerson1971EventImportedInitial conversion from brigace
228 May 2021 19:05:19WBPerson1983Name_changeCGC_nameCbr-prdm-14
328 Jul 2021 11:12:30WBPerson1983Name_changeCGC_nameRemoved
StatusLive
Gene_infoBiotypeSO:0001217
RNASeq_FPKMWBls:00000020.61724From_analysisRNASeq.briggsae.WBls:0000002.control_mean
0.810019From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
1.0417From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
0.299717From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
0.537859From_analysisRNASeq.briggsae.WBls:0000002.control_mean
0.554868From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000030.076292From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.152585From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.388978From_analysisRNASeq.briggsae.WBls:0000003.control_mean
1.01435From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000040.806557From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
1.55615From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
2.30574From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
0.93917From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
1.51477From_analysisRNASeq.briggsae.WBls:0000004.control_mean
1.68316From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
1.8392From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:00000270.60824From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.82472From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
0From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.91236From_analysisRNASeq.briggsae.WBls:0000027.control_median
0.98624From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.12024From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000350.887955From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.912992From_analysisRNASeq.briggsae.WBls:0000038.control_mean
1.12658From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
1.1802From_analysisRNASeq.briggsae.WBls:0000038.control_median
1.23382From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
1.29157From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:00000410.054072From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.103463From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.142663From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.149069From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.194674From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.218444From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.195677From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.206559From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.267843From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
0.335564From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.293433From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.360756From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.444796From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.661612From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.258371From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
0.287589From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.309563From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:00001010.444796From_analysisRNASeq.briggsae.total_over_all_stages.control_median
0.745959From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
0.553204From_analysisRNASeq.briggsae.total_over_all_stages.control_median
0.799748From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (21)
ParalogWBGene00025178Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00025749Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00025908Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00028054Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029089Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00030413Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033865Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033866Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033867Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036114Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Zinc finger, C2H2 type; Zinc finger C2H2 superfamily; and Zinc finger C2H2-type. Is an ortholog of C. elegans F47E1.20 and prdm-14.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG00197
Corresponding_CDS_historyCBG00197:bp194
CBG00197:bp255
Corresponding_transcriptCBG00197.1
Other_sequenceDviv_isotig20696
OF01309
Tcir_isotig16812
RSC03811_1
JO474293.1
Dviv_isotig20695
RS08891
Oden_isotig20308
JI169315.1
Experimental_infoExpr_patternExpr1053198
Microarray_resultsGPL8303_CB6_WBGene00023642_A
GPL8303_CB6_WBGene00023642_B
GPL14143_CBG00197_389-448_0.871_4_C
GPL14143_CBG00197_540-599_0.898_1_A
GPL14143_CBG00197_627-686_0.887_2_B
Remark[210728 pad] The CGC name Cbr-prdm-14 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene