WormBase Tree Display for Gene: WBGene00023745

WBGene00023745 SMap: S_parent: Sequence: cb25.fpc0010b
  Identity: Version: 5
    Name: CGC_name: Cbr-sea-1.1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG00340
      Molecular_name: CBG00340
        CBG00340.1
        CBP47357
      Other_name: CBG_00340 Accession_evidence: NDB HE600968
      Public_name: CBG00340
    DB_info: Database: NDB locus_tag CBG_00340
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:53 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 08 Feb 2019 15:42:27 WBPerson1983 Name_change: CGC_name: Cbr-sea-1.1
        3 08 May 2019 10:09:28 WBPerson1983 Name_change: CGC_name: Removed
        4 04 Feb 2020 15:43:57 WBPerson1983 Name_change: CGC_name: Cbr-sea-1.1
        5 04 Jun 2020 14:38:22 WBPerson1983 Name_change: CGC_name: Removed
        6 28 May 2021 19:05:19 WBPerson1983 Name_change: CGC_name: Cbr-sea-1.1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sea
    RNASeq_FPKM: WBls:0000002 10.4186 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        11.296 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        11.7281 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        8.23173 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        11.512 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        11.5722 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        15.0331 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
      WBls:0000003 61.501 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        72.6776 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        83.8542 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        69.2859 From_analysis: RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        71.547 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 22.7903 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        25.0898 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        27.3892 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        23.0518 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        23.0781 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        24.4551 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        25.9663 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
      WBls:0000024 (11)
      WBls:0000027 0.054587 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        0.16376 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        0 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        0.04094 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
      WBls:0000035 0 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
            RNASeq.briggsae.WBls:0000038.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
            RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
            RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
            RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
      WBls:0000041 26.0442 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        2.71775 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        30.4509 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        32.5103 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        34.5697 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        36.4384 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        19.8816 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        19.965 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        5.63368 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        9.47908 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 11.4186 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        14.8972 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        4.94281 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        5.20827 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        5.37001 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        8.36738 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        14.7573 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        8.39431 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        9.43237 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
      WBls:0000101 12.8736 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        4.94281 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        14.7268 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        6.9327 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
    GO_annotation: 00127088
      00127089
      00127090
      00127091
    Ortholog (53)
    Paralog (23)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Is an ortholog of C. elegans sea-1. In C. elegans, sea-1 is involved in dosage compensation by hypoactivation of X chromosome; positive regulation of transcription by RNA polymerase II; and sex determination. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG00340
    Corresponding_CDS_history: CBG00340:bp224
      CBG00340:bp256
    Corresponding_transcript: CBG00340.1
  Experimental_info: Expr_pattern: Expr1069836
    Microarray_results: GPL8303_CB6_WBGene00023745_A
      GPL8303_CB6_WBGene00023745_B
      GPL14143_CBG00340_279-338_0.674_223_C
      GPL14143_CBG00340_1446-1505_0.887_23_B
      GPL14143_CBG00340_1963-2022_0.966_1_A
  Remark: [190507 pad] The CGC name Cbr-sea-1.1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [200603 pad] The CGC name Cbr-sea-1.1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene