WormBase Tree Display for Gene: WBGene00023778

WBGene00023778 SMap: S_parent: Sequence: cb25.fpc0010b
  Identity: Version: 3
    Name: CGC_name: Cbr-sod-5 From_analysis: Inferred_from_orthology
      Sequence_name: CBG00383
      Molecular_name: CBG00383
        CBG00383.1
        CBP00092
      Other_name: CBG_00383 Accession_evidence: NDB HE600968
      Public_name: CBG00383
    DB_info: Database: NDB locus_tag CBG_00383
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:53 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Mar 2018 10:26:10 WBPerson4025 Name_change: CGC_name: Cbr-sod-5
        3 04 Jun 2020 14:38:22 WBPerson1983 Name_change: CGC_name: Removed
        4 28 May 2021 19:05:19 WBPerson1983 Name_change: CGC_name: Cbr-sod-5
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sod
    RNASeq_FPKM: WBls:0000002 12.3519 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        14.7694 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        17.0636 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        5.22262 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        11.3438 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        11.5446 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        8.31972 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
      WBls:0000003 0.253101 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        0.734666 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        1.21623 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBls:0000003.control_median
        1.13796 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        1.94454 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 1.50368 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        2.01499 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        2.5263 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        2.57962 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        2.62243 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        2.8162 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        3.42949 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
      WBls:0000024 (11)
      WBls:0000027 0 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        2.86915 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        8.60744 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        1.10217 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        2.20435 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        2.70295 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
      WBls:0000035 0.538523 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.16953 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        1.08627 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        1.16739 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        1.2281 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        1.36994 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        2.04384 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
      WBls:0000041 0.322134 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        0.616382 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        0.790183 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.963985 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        1.05551 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        2.31954 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        1.64176 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        2.88985 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        3.60952 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        9.50756 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 0.262678 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        0.71953 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.722664 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0.78451 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        0.863735 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        0.964063 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        0.742891 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.822102 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        0.859694 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 0.863735 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        2.42505 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        1.15125 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        2.78 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00127131
      00127132
      00127133
    Ortholog (28)
    Paralog: WBGene00031551 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00032360 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable copper ion binding activity. Predicted to be involved in superoxide metabolic process. Is an ortholog of C. elegans sod-1 and sod-5. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG00383
    Corresponding_CDS_history: CBG00383:bp194
    Corresponding_transcript: CBG00383.1
    Other_sequence (45)
  Experimental_info: Expr_pattern: Expr1065952
    Microarray_results: GPL8303_CB6_WBGene00023778_A
      GPL8303_CB6_WBGene00023778_B
      GPL14143_CBG00383_120-179_0.953_1_A
  Remark: [200603 pad] The CGC name Cbr-sod-5 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene