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WormBase Tree Display for Gene: WBGene00023880

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Name Class

WBGene00023880SMapS_parentSequencecb25.fpc0010a
IdentityVersion2
NameCGC_nameCbr-hut-1From_analysisInferred_from_orthology
Sequence_nameCBG00501
Molecular_nameCBG00501
CBG00501.1
CBP39612
Other_nameCBG_00501Accession_evidenceNDBHE600978
Public_nameCbr-hut-1
DB_infoDatabaseNDBlocus_tagCBG_00501
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:53WBPerson1971EventImportedInitial conversion from brigace
205 Mar 2009 13:26:53WBPerson9133Name_changeCGC_nameCbr-hut-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhut
RNASeq_FPKMWBls:000000214.3517From_analysisRNASeq.briggsae.WBls:0000002.control_mean
17.3264From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
18.4081From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
7.3206From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
10.1752From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
13.3076From_analysisRNASeq.briggsae.WBls:0000002.control_mean
13.7508From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:000000318.7881From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
24.2822From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
29.7762From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
21.8021From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
23.4555From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000419.2814From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
22.212From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
25.1425From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
15.5174From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
21.8234From_analysisRNASeq.briggsae.WBls:0000004.control_mean
23.7657From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
25.4099From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000271.69795From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
4.13781From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
4.99938From_analysisRNASeq.briggsae.WBls:0000027.control_mean
9.16237From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
12.5749From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
6.65009From_analysisRNASeq.briggsae.WBls:0000027.control_median
6.89326From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003519.6052From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003812.1408From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
13.0058From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
14.2241From_analysisRNASeq.briggsae.WBls:0000038.control_median
15.375From_analysisRNASeq.briggsae.WBls:0000038.control_mean
15.4424From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
20.911From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:000004116.5365From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
20.0747From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
20.4318From_analysisRNASeq.briggsae.WBls:0000041.control_median
20.7889From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
21.0579From_analysisRNASeq.briggsae.WBls:0000041.control_mean
26.8314From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
21.4088From_analysisRNASeq.briggsae.WBls:0000041.control_median
21.7036From_analysisRNASeq.briggsae.WBls:0000041.control_mean
22.0287From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
23.9613From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:000006311.0212From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
11.5863From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
11.874From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
12.3797From_analysisRNASeq.briggsae.WBls:0000063.control_mean
12.7099From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
14.707From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
12.292From_analysisRNASeq.briggsae.WBls:0000063.control_median
12.7742From_analysisRNASeq.briggsae.WBls:0000063.control_mean
14.7466From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010115.6549From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
16.2198From_analysisRNASeq.briggsae.total_over_all_stages.control_median
16.3782From_analysisRNASeq.briggsae.total_over_all_stages.control_median
16.4203From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00127233
Ortholog (33)
ParalogWBGene00027856Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00030668Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00030893Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040435Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in transmembrane transport. Is an ortholog of C. elegans hut-1. In C. elegans, hut-1 is involved in endoplasmic reticulum organization and nematode larval development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG00501
Corresponding_CDS_historyCBG00501:bp255
Corresponding_transcriptCBG00501.1
Other_sequence (46)
Experimental_infoExpr_patternExpr1067244
Microarray_resultsGPL8303_CB6_WBGene00023880_A
GPL8303_CB6_WBGene00023880_B
GPL14143_CBG00501_596-655_0.894_8_C
GPL14143_CBG00501_785-844_0.897_7_B
GPL14143_CBG00501_879-938_0.816_46_A
MethodGene