WormBase Tree Display for Gene: WBGene00024356

WBGene00024356 SMap: S_parent: Sequence: cb25.fpc0022b
  Identity: Version: 2
    Name: CGC_name: Cbr-sqv-8 From_analysis: Inferred_from_orthology
      Sequence_name: CBG01067
      Molecular_name: CBG01067
        CBG01067.1
        CBP05903
      Other_name: CBG_01067 Accession_evidence: NDB HE600951
      Public_name: Cbr-sqv-8
    DB_info: Database: NDB locus_tag CBG_01067
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:54 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-sqv-8
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sqv
    RNASeq_FPKM: WBls:0000002 31.0121 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        31.4805 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        33.612 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        38.3434 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        27.735 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        31.2463 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        32.1427 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 61.2393 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        69.7864 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        78.3335 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        70.1697 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        70.9363 From_analysis: RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 58.7958 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
            RNASeq.briggsae.WBls:0000004.control_median
        61.2658 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        63.7358 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        55.0289 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        55.7281 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        58.7302 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        60.3625 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 12.1569 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        1.58277 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        29.9432 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        4.94474 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        12.7795 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        14.2712 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        20.6142 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 19.7593 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 17.8913 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        19.1718 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        21.2593 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        23.3467 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        24.6043 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        4.44222 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
      WBls:0000041 18.832 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        45.1946 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        50.838 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        52.5914 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        54.3447 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        56.7637 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        23.7824 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        26.2644 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        38.4709 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        38.5512 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
      WBls:0000063 16.9168 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        21.3879 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        25.1845 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        25.4312 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        30.3083 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        33.3583 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        26.3266 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        27.7464 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        30.8038 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 28.3198 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        31.5627 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        29.1315 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        33.8572 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00127697
      00127698
    Ortholog (32)
    Paralog: WBGene00030102 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00030103 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00030104 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity. Predicted to be located in membrane. Is an ortholog of C. elegans sqv-8. In C. elegans, sqv-8 is involved in several processes, including chondroitin sulfate biosynthetic process; multicellular organism reproduction; and pharynx development. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG01067
    Corresponding_CDS_history: CBG01067:bp194
    Corresponding_transcript: CBG01067.1
    Other_sequence (31)
  Experimental_info: Expr_pattern: Expr1056460
    Microarray_results: GPL8303_CB6_WBGene00024356_A
      GPL8303_CB6_WBGene00024356_B
      GPL14143_CBG01067_554-613_0.791_15_C
      GPL14143_CBG01067_878-937_0.765_32_B
      GPL14143_CBG01067_924-983_0.858_2_A
  Method: Gene