WormBase Tree Display for Gene: WBGene00024709

WBGene00024709 SMap: S_parent: Sequence: cb25.fpc0024
  Identity: Version: 2
    Name: CGC_name: Cbr-vps-60 From_analysis: Inferred_from_orthology
      Sequence_name: CBG01476
      Molecular_name: CBG01476
        CBG01476.1
        CBP00358
      Other_name: CBG_01476 Accession_evidence: NDB HE601420
      Public_name: Cbr-vps-60
    DB_info: Database: NDB locus_tag CBG_01476
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:54 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 08 Aug 2013 16:53:10 WBPerson2970 Name_change: CGC_name: Cbr-vps-60
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: vps
    RNASeq_FPKM: WBls:0000002 125.463 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        155.389 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        158.785 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        181.92 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        140.228 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        149.507 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        151.599 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 168.763 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBls:0000003.control_median
        209.425 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        250.087 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        138.193 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        185.681 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 102.681 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        111.324 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
            RNASeq.briggsae.WBls:0000004.control_median
        94.0373 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        108.273 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        120.543 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        121.219 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        94.2433 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
      WBls:0000024 (12)
      WBls:0000027 24.6753 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        43.5232 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        8.08709 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        97.8071 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        193.448 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        61.2412 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        81.0044 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
      WBls:0000035 103.833 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 120.754 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        124.149 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        125.617 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        130.48 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        213.375 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        31.9887 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
      WBls:0000041 179.225 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        196.29 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        199.113 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        201.076 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        205.862 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        215.076 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        210.469 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        219.077 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        233.084 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        284.925 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        64.2412 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        69.6073 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        74.5846 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        81.7726 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        95.2413 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        126.921 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        74.6878 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        78.1786 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
      WBls:0000101 111.324 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        115.394 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        120.648 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        126.295 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00128040
    Ortholog (30)
    Paralog: WBGene00025595 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00026147 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00027020 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to be involved in vacuolar transport. Is an ortholog of C. elegans vps-60. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG01476
    Corresponding_CDS_history: CBG01476:bp194
    Corresponding_transcript: CBG01476.1
    Other_sequence (65)
  Experimental_info: Expr_pattern: Expr1069678
    Microarray_results: GPL8303_CB6_WBGene00024709_A
      GPL8303_CB6_WBGene00024709_B
      GPL14143_CBG01476_235-294_0.873_18_C
      GPL14143_CBG01476_264-323_0.941_2_A
      GPL14143_CBG01476_559-618_0.850_27_B
  Method: Gene