WormBase Tree Display for Gene: WBGene00025328

WBGene00025328 SMap: S_parent: Sequence: cb25.fpc0053
  Identity: Version: 2
    Name: CGC_name: Cbr-ndk-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG02247
      Molecular_name: CBG02247
        CBG02247.1
        CBP00550
      Other_name: CBG_02247 Accession_evidence: NDB HE601486
      Public_name: Cbr-ndk-1
    DB_info: Database: NDB locus_tag CBG_02247
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:54 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 29 Mar 2011 15:24:49 WBPerson2970 Name_change: CGC_name: Cbr-ndk-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ndk
    RNASeq_FPKM: WBls:0000002 1104.73 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        911.085 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        925.657 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        980.491 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        1014.43 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        1015.19 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        1116.23 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
      WBls:0000003 365.936 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        377.681 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        389.427 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBls:0000003.control_median
        410.12 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        474.997 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 349.97 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        352.068 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        354.165 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        374.299 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        382.033 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        398.808 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        432.925 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
      WBls:0000024 1003.01 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
        1012.81 From_analysis: RNASeq.briggsae.WBls:0000024.control_mean
        1178.09 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
        434.297 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
        693.335 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
        755.295 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
        913.498 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
        956.634 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
        979.822 From_analysis: RNASeq.briggsae.WBls:0000024.control_median
        490.141 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
        530.023 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
        680.729 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
      WBls:0000027 360.593 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        536.103 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        617.691 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        630.026 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        537.139 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        540.245 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        578.968 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
      WBls:0000035 893.504 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 1662.98 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        561.571 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        738.933 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        786.329 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        833.725 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        949.302 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
      WBls:0000041 519.81 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        746.955 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        793.202 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        815.068 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        836.933 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        837.873 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        527.425 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        591.433 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        684.446 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        692.318 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
      WBls:0000063 1401.32 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        789.574 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        825.23 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        856.94 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        897.66 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        954.145 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        862.302 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        867.664 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        939.731 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
      WBls:0000101 776.199 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        833.725 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        732.468 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        791.388 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
    GO_annotation: 00128695
      00128696
      00128697
      00128698
    Ortholog: WBGene00009119 Caenorhabditis elegans From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00059890 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00143637 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00090935 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00131025 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      CBOVI.g9868 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g5416 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g14108 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g8341 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g9644 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g3021 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g753 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g14435 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g8911 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g15157 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00306.g8905 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-ndk-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold547.g3529 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_02728.g27709 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_05196 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_002405 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g05507 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g08298 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g19877 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10214300 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00234042 Brugia malayi From_analysis: WormBase-Compara
      chrI_pilon.g2073 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00237314 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00100750 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00272291 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00260807 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00285959 Trichuris muris From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable nucleoside diphosphate kinase activity. Predicted to be involved in CTP biosynthetic process; GTP biosynthetic process; and UTP biosynthetic process. Is an ortholog of C. elegans ndk-1. In C. elegans, ndk-1 is involved in several processes, including positive regulation of MAPK cascade; positive regulation of vulval development; and regulation of cellular component organization. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG02247
    Corresponding_CDS_history: CBG02247:bp194
    Corresponding_transcript: CBG02247.1
    Other_sequence: AI209318.1
      MI00863
      ES743361.1
      FE908026.1
      TSC01471_1
      BU087955.1
      AS01413
      FG971051.1
      FC816689.1
      CB037684.1
      DA06030
      FC820795.1
      CBC02227_1
      FE913424.1
      FE915356.1
      EX010237.1
      FE908271.1
      PTC00215_1
      NAC00455_1
      FD514280.1
      FC820835.1
      PTC03795_1
      EX008351.1
      EX010828.1
      PVC02869_1
      FE906965.1
      ES412393.1
      FD517355.1
      AS17387
      WBC01227_1
      Acan_isotig14019
      MCC05188_1
      FD515924.1
      EX502030.1
      PPC00052_1
      HG11924
      CSC00160_1
      EX010729.1
      EX010024.1
      ACC05733_1
      GO249680.1
      TSC06303_1
      CB038560.1
      MC00052
      BXC00685_1
      JI214012.1
      PTC01489_1
      RSC00083_1
      FD514377.1
      EX914959.1
      Tcir_isotig06784
      FD516526.1
      EX910496.1
      AI130280.1
      GPC02069_1
      ACC00057_1
      AI374072.1
      ACC10633_1
      HBC04780_1
      FG979872.1
      FC810986.1
      PT00209
      FD515856.1
      Acan_isotig19166
      Tcir_isotig21419
      EX007090.1
      FE912344.1
      CJC00080_1
      ES562752.1
      SSC00904_1
      BU586243.1
      EX011865.1
      GE626521.1
      MHC06952_1
      HS00859
      HG03426
      FG587168.1
      CB014265.1
      FG976386.1
      NB10731
      AS07827
      GE626097.1
      EX009098.1
      CRC04194_1
      FE911515.1
      NBC00561_1
      AS03119
      MIC00716_2
      HGC00088_1
      BG809080.1
      FE912845.1
      CA840685.1
      FG976139.1
      GE638806.1
      FG973544.1
      FC811471.1
      MC01102
      FE910889.1
      FD515479.1
      FE914860.1
      AS04863
      AI130279.1
      BMC00047_1
      HC02149
      CR12440
      AS05383
      AE01110
      EX913957.1
      FE917393.1
      ES412172.1
      FE909655.1
      EX013923.1
      FD516571.1
      FD515098.1
      CBC12037_1
      FE910311.1
      FD515582.1
      HG05862
      FD515585.1
      MPC00688_1
      CB038080.1
      ES411650.1
      MIC08792_1
      PEC00444_1
      FG973894.1
      MH01981
      GO249077.1
      AE03459
      BXC06338_1
      PP00613
      FE917931.1
      FE914210.1
      PPC04241_1
      FD516339.1
      FE916631.1
      CK850839.1
      FD517600.1
      FG972072.1
      FD516133.1
      CR02534
      FE912465.1
      DV019766.1
      PT00962
      EX913650.1
      FG976945.1
      AS00446
      FC817009.1
      BG467703.1
      SS01168
      AI574607.1
      EX008488.1
      AS04564
      FD515025.1
      MJ00455
      FG972903.1
      ASC17419_1
      CR09235
      ES742892.1
      EX552318.1
      FD515416.1
      AYC03168_1
      AI322143.1
      BMC14499_1
      ES411237.1
      OVC00968_1
      FC811927.1
      DA00226
      AAC00362_1
      DA04437
      CB038002.1
      HCC02717_1
      MC01247
      MI02568
      FD517286.1
      BU087576.1
      ES412477.1
      TDC00829_2
      FC818243.1
      CN478245.1
      GO252118.1
      FC821444.1
      FC813646.1
      FG974547.1
      FC821672.1
      HBC00058_1
      GT571479.1
      FE914117.1
      TCC02381_1
      Hbac_isotig05163
      FE913641.1
      CBC07806_1
      PT00503
      ES410618.1
      FD514492.1
      GP02045
      FD514043.1
      FD514896.1
      FD516493.1
      CRC00534_1
      FG980983.1
      HSC01167_1
      EX910191.1
      CN478280.1
      ASC00275_1
      Tcir_isotig13402
      ES743281.1
      TS00958
      FC812968.1
      MIC00716_1
      FD515364.1
      PT04324
      FG979831.1
      FC818681.1
      Name_isotig06944
      FG977333.1
      EY460384.1
      ASC28437_1
      FG355833.1
      ASC01624_1
      ES744055.1
      TLC00248_1
      HG03851
      PTC03191_1
      EX013034.1
      JI471991.1
      PE00090
      FC816782.1
      CBC11147_1
      ES412733.1
      AI239283.1
      MP02178
      EX915058.1
      Acan_isotig05526
      ACC28174_1
      MP00030
      DAC00299_1
      ES412476.1
      FE915898.1
      FD515568.1
      FG972294.1
      Tcol_isotig16644
      PP00012
      Dviv_isotig00123
      HBC27733_1
      FD515985.1
      MCC00889_1
      Oden_isotig25449
      SR01051
      EL784565.1
      FD515597.1
      CD455760.1
      FE912530.1
      CB036370.1
      FC817541.1
      EU263311.1
      GE625261.1
      FE913143.1
      AE00776
      ASC01695_1
      FC811944.1
      AS05186
      AW739447.1
      DW718385.1
      GT571524.1
      ES672532.1
      FC812678.1
      JO475666.1
      GO240059.1
      EL888812.1
      ES412493.1
      FC816452.1
      FE915060.1
      BE346044.1
      EL784369.1
      AIC00062_1
      FC811895.1
      ES409807.1
      CJC16500_1
      EX911043.1
      FD514047.1
      FD516548.1
      EX012490.1
      ASC39102_1
      Tcir_isotig13964
      ES740942.1
      GP02662
      AI130662.1
      TDC00829_1
      Tcir_isotig09919
      EL889739.1
      CR02734
      R95343.1
      MI04500
      BE420434.1
      TX01987
      CB036738.1
      SRC00103_1
      FD516539.1
      HC03921
      AS10837
      HG10080
      SRC03059
      FD516690.1
      PPC05154_1
      FG975916.1
      MJC04111_1
      FG975678.1
      EX011915.1
      EX007844.1
      BU666169.1
      CB037789.1
      HG09850
      CB036815.1
      FG970823.1
      FE909756.1
      EX501202.1
      FG977289.1
      AI618864.1
      CR12579
      FC819512.1
      BG734342.1
      EX910614.1
      Oden_isotig23070
      AI318013.1
      ALC00562_1
      FC813123.1
      BG734300.1
      AS07661
      BU586253.1
      TCC00448_1
      EX009035.1
      GR977505.1
      FG974756.1
      BG354843.1
      EH005371.1
      EX564899.1
      BMC00129_1
      DA05135
      EY461869.1
      NB07605
      BU087971.1
      BU087754.1
      RS06166
      Dviv_isotig00122
      EX913007.1
      FG977200.1
      BXC07501_1
      FD513950.1
      TX00545
      FD515480.1
      AYC00172_2
      FE913044.1
      CR07507
      CA953528.1
      JI172949.1
      FC818335.1
      ES739381.1
      PPC04243_1
      FD516528.1
      FD517388.1
      AYC00172_1
      GO238973.1
      AS12014
      AS03188
      CV826710.1
      ES880483.1
      CRC00791_1
      FD517107.1
      FC817542.1
      BQ804068.1
      HCC01900_1
      CBC00037_1
      ES411476.1
      BE132574.1
      DW718237.1
      FC817524.1
      BU088296.1
      FE914888.1
      EX010162.1
      GRC00438_1
      FC811202.1
      SC00896
      FD514153.1
      PPC03599_1
      CBC02982_1
      MI02572
      Name_isotig06188
      BU088206.1
      GR11794
  Experimental_info: Expr_pattern: Expr1050143
    Microarray_results: GPL8303_CB6_WBGene00025328_A
      GPL8303_CB6_WBGene00025328_B
      GPL8303_CB6_WBGene00025328_C
      GPL14143_CBG02247_68-127_0.843_3_B
      GPL14143_CBG02247_154-213_0.805_8_C
      GPL14143_CBG02247_409-468_0.952_1_A
    Expression_cluster: WBPaper00051425:CB_L1_vs_embryo_downregulated
  Method: Gene