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WormBase Tree Display for Gene: WBGene00025572

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Name Class

WBGene00025572SMapS_parentSequencecb25.fpc0058
IdentityVersion2
NameCGC_nameCbr-vps-35From_analysisInferred_from_orthology
Sequence_nameCBG02534
Molecular_nameCBG02534
CBG02534.1
CBP44158
Other_nameCBG_02534Accession_evidenceNDBHE601438
Public_nameCbr-vps-35
DB_infoDatabaseNDBlocus_tagCBG_02534
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:55WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-vps-35
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvps
AlleleWBVar00107443
WBVar00107442
RNASeq_FPKMWBls:000000221.6427From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
30.5947From_analysisRNASeq.briggsae.WBls:0000002.control_mean
30.9006From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
39.2409From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
26.7826From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
28.8416From_analysisRNASeq.briggsae.WBls:0000002.control_median
29.6417From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000328.8086From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
30.8466From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
32.8847From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
32.6803From_analysisRNASeq.briggsae.WBls:0000003.control_mean
36.3475From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000429.7807From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
29.8737From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
29.9667From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
29.9615From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
30.8273From_analysisRNASeq.briggsae.WBls:0000004.control_mean
31.6601From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
32.7675From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000271.17812From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
12.3538From_analysisRNASeq.briggsae.WBls:0000027.control_mean
32.2384From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.64481From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
11.2401From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
12.0754From_analysisRNASeq.briggsae.WBls:0000027.control_mean
7.44245From_analysisRNASeq.briggsae.WBls:0000027.control_median
WBls:000003518.5146From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003813.3973From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
13.7704From_analysisRNASeq.briggsae.WBls:0000038.control_median
14.1436From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
18.044From_analysisRNASeq.briggsae.WBls:0000038.control_mean
39.5708From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
5.06444From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004124.5609From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
53.2057From_analysisRNASeq.briggsae.WBls:0000041.control_mean
60.5727From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
61.9221From_analysisRNASeq.briggsae.WBls:0000041.control_median
63.2716From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
64.4175From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
30.8552From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
36.0266From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
46.6174From_analysisRNASeq.briggsae.WBls:0000041.control_mean
48.2996From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006326.2012From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
26.8298From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
27.9085From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
31.427From_analysisRNASeq.briggsae.WBls:0000063.control_mean
31.7569From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
44.4388From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
29.4695From_analysisRNASeq.briggsae.WBls:0000063.control_median
31.0306From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
31.361From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010127.4932From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
27.9085From_analysisRNASeq.briggsae.total_over_all_stages.control_median
27.9993From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
29.8711From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00128959
00128960
00128961
Ortholog (35)
Structured_descriptionAutomated_descriptionPredicted to be involved in protein transport and retrograde transport, endosome to Golgi. Predicted to be part of retromer, cargo-selective complex. Is an ortholog of C. elegans vps-35. In C. elegans, vps-35 is involved in positive regulation of protein localization to cell periphery; protein localization to postsynaptic membrane; and regulation of presynapse assembly.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG02534
Corresponding_CDS_historyCBG02534:bp194
CBG02534:bp255
Corresponding_transcriptCBG02534.1
Other_sequence (24)
Experimental_infoExpr_patternExpr1065687
Microarray_resultsGPL8303_CB6_WBGene00025572_A
GPL8303_CB6_WBGene00025572_B
GPL14143_CBG02534_1906-1965_0.758_63_A
GPL14143_CBG02534_2129-2188_0.812_1_B
GPL14143_CBG02534_2427-2486_0.800_2_C
MethodGene