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WormBase Tree Display for Gene: WBGene00025648

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Name Class

WBGene00025648SMapS_parentSequencecb25.fpc0058
IdentityVersion2
NameCGC_nameCbr-set-4From_analysisInferred_from_orthology
Sequence_nameCBG02629
Molecular_nameCBG02629
CBG02629.1
CBP47083
Other_nameCBG_02629Accession_evidenceNDBHE601438
Public_nameCbr-set-4
DB_infoDatabaseNDBlocus_tagCBG_02629
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:55WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-set-4
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classset
RNASeq_FPKMWBls:000000238.3535From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
45.6692From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
46.33From_analysisRNASeq.briggsae.WBls:0000002.control_mean
54.9673From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
47.3167From_analysisRNASeq.briggsae.WBls:0000002.control_mean
47.973From_analysisRNASeq.briggsae.WBls:0000002.control_median
50.2769From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000353.074From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
71.0895From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
89.1051From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
63.9576From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
68.7122From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000461.2022From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
68.2802From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
75.3581From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
66.4564From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
71.1103From_analysisRNASeq.briggsae.WBls:0000004.control_mean
74.2384From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
78.2966From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002713.1611From_analysisRNASeq.briggsae.WBls:0000027.control_mean
30.1051From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.1361From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
6.24218From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
17.4988From_analysisRNASeq.briggsae.WBls:0000027.control_mean
18.1736From_analysisRNASeq.briggsae.WBls:0000027.control_median
30.5118From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003522.3928From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003814.0184From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
26.1914From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
26.2852From_analysisRNASeq.briggsae.WBls:0000038.control_mean
27.4677From_analysisRNASeq.briggsae.WBls:0000038.control_median
28.744From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
36.1869From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004156.2855From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
59.9384From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
60.1491From_analysisRNASeq.briggsae.WBls:0000041.control_median
60.2512From_analysisRNASeq.briggsae.WBls:0000041.control_mean
60.3597From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
64.4213From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
62.3905From_analysisRNASeq.briggsae.WBls:0000041.control_median
65.2188From_analysisRNASeq.briggsae.WBls:0000041.control_mean
68.1843From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
82.1238From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006328.4179From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
31.8211From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
32.4559From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
37.7495From_analysisRNASeq.briggsae.WBls:0000063.control_mean
38.0867From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
57.966From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
35.2713From_analysisRNASeq.briggsae.WBls:0000063.control_median
39.3046From_analysisRNASeq.briggsae.WBls:0000063.control_mean
47.0797From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010140.5763From_analysisRNASeq.briggsae.total_over_all_stages.control_median
40.7648From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
44.5349From_analysisRNASeq.briggsae.total_over_all_stages.control_median
45.8764From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (29)
ParalogWBGene00034974Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Histone-lysine N-methyltransferase, N-terminal domain; Histone-lysine N-methyltransferase Suv4-20/Set9; and SET domain. Is an ortholog of C. elegans set-4. In C. elegans, set-4 is involved in determination of adult lifespan.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG02629
Corresponding_CDS_historyCBG02629:bp194
CBG02629:bp255
Corresponding_transcriptCBG02629.1
Other_sequence (15)
Experimental_infoExpr_patternExpr1057014
Microarray_resultsGPL8303_CB6_WBGene00025648_A
GPL8303_CB6_WBGene00025648_B
GPL14143_CBG02629_485-544_0.841_7_C
GPL14143_CBG02629_495-554_0.777_55_B
GPL14143_CBG02629_603-662_0.849_5_A
MethodGene