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WormBase Tree Display for Gene: WBGene00025834

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Name Class

WBGene00025834SMapS_parentSequencecb25.fpc0058
IdentityVersion2
NameCGC_nameCbr-gtf-2E2From_analysisInferred_from_orthology
Sequence_nameCBG02864
Molecular_nameCBG02864
CBG02864.1
CBP34313
Other_nameCBG_02864Accession_evidenceNDBHE601438
Public_nameCbr-gtf-2E2
DB_infoDatabaseNDBlocus_tagCBG_02864
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:55WBPerson1971EventImportedInitial conversion from brigace
208 Feb 2019 15:42:27WBPerson1983Name_changeCGC_nameCbr-gtf-2E2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgtf
RNASeq_FPKMWBls:000000234.2469From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
44.1557From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
52.1359From_analysisRNASeq.briggsae.WBls:0000002.control_mean
78.005From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
59.6985From_analysisRNASeq.briggsae.WBls:0000002.control_mean
61.0803From_analysisRNASeq.briggsae.WBls:0000002.control_median
82.3864From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003100.081From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
107.749From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
115.418From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
103.422From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
106.307From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000465.1422From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
65.5267From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
65.9113From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
56.2969From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
65.8047From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
65.8107From_analysisRNASeq.briggsae.WBls:0000004.control_mean
75.8985From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000271.22646From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
13.3069From_analysisRNASeq.briggsae.WBls:0000027.control_mean
32.8821From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
5.81213From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
15.3242From_analysisRNASeq.briggsae.WBls:0000027.control_median
16.1892From_analysisRNASeq.briggsae.WBls:0000027.control_mean
24.8362From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003517.446From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003811.2505From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
23.3999From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
26.8261From_analysisRNASeq.briggsae.WBls:0000038.control_mean
27.121From_analysisRNASeq.briggsae.WBls:0000038.control_median
30.842From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
41.812From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:0000041102.229From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
65.0337From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
88.4898From_analysisRNASeq.briggsae.WBls:0000041.control_mean
91.251From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
93.3483From_analysisRNASeq.briggsae.WBls:0000041.control_median
95.4455From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
127.087From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
90.4737From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
95.2533From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:000006325.375From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
30.8658From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
30.9381From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
33.6162From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
35.2265From_analysisRNASeq.briggsae.WBls:0000063.control_mean
55.3372From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
32.2771From_analysisRNASeq.briggsae.WBls:0000063.control_median
37.2588From_analysisRNASeq.briggsae.WBls:0000063.control_mean
47.4206From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010134.2469From_analysisRNASeq.briggsae.total_over_all_stages.control_median
46.1791From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
42.9838From_analysisRNASeq.briggsae.total_over_all_stages.control_median
52.969From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00129246
00129247
Ortholog (30)
Structured_descriptionAutomated_descriptionPredicted to be involved in transcription initiation at RNA polymerase II promoter. Predicted to be part of transcription factor TFIIE complex. Is an ortholog of C. elegans gtf-2E2. In C. elegans, gtf-2E2 is involved in transcription initiation at RNA polymerase II promoter.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG02864
Corresponding_CDS_historyCBG02864:bp194
Corresponding_transcriptCBG02864.1
Other_sequence (31)
Experimental_infoExpr_patternExpr1055543
Microarray_resultsGPL8303_CB6_WBGene00025834_A
GPL8303_CB6_WBGene00025834_B
GPL14143_CBG02864_490-549_0.862_10_B
GPL14143_CBG02864_680-739_0.877_2_C
GPL14143_CBG02864_715-774_0.877_3_A
MethodGene