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WormBase Tree Display for Gene: WBGene00025843

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Name Class

WBGene00025843SMapS_parentSequencecb25.fpc0058
IdentityVersion1
NameCGC_nameCbr-hacl-1From_analysisInferred_from_orthology
Sequence_nameCBG02874
Molecular_nameCBG02874
CBG02874.1
CBP00867
Other_nameCBG_02874Accession_evidenceNDBHE601438
Public_nameCBG02874
DB_infoDatabaseNDBlocus_tagCBG_02874
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:55WBPerson1971EventImportedInitial conversion from brigace
228 Jul 2021 11:12:28WBPerson1983Name_changeCGC_nameCbr-hacl-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhacl
AlleleWBVar00141798
RNASeq_FPKMWBls:0000002115.402From_analysisRNASeq.briggsae.WBls:0000002.control_mean
163.432From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
85.3257From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
97.4492From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
107.118From_analysisRNASeq.briggsae.WBls:0000002.control_mean
82.2657From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
91.3875From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:000000349.0523From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
49.6441From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
50.2358From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
51.8887From_analysisRNASeq.briggsae.WBls:0000003.control_mean
56.3779From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000467.5819From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
67.754From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
67.926From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
65.0935From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
66.9715From_analysisRNASeq.briggsae.WBls:0000004.control_mean
67.0108From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
67.2451From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024119.399From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
120.041From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
212.669From_analysisRNASeq.briggsae.WBls:0000024.control_mean
240.474From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
246.367From_analysisRNASeq.briggsae.WBls:0000024.control_median
252.261From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
274.044From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
83.8988From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
99.2263From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
131.342From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
169.035From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
97.6945From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
WBls:000002711.194From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
29.0725From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
39.7556From_analysisRNASeq.briggsae.WBls:0000027.control_mean
79.0004From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
128.8From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
54.0364From_analysisRNASeq.briggsae.WBls:0000027.control_median
62.0167From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:0000035139.248From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038101.381From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
119.385From_analysisRNASeq.briggsae.WBls:0000038.control_median
137.389From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
166.942From_analysisRNASeq.briggsae.WBls:0000038.control_mean
378.001From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
50.9957From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:0000041100.737From_analysisRNASeq.briggsae.WBls:0000041.control_median
103.274From_analysisRNASeq.briggsae.WBls:0000041.control_mean
108.872From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
129.59From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
82.0337From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
92.6021From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
100.397From_analysisRNASeq.briggsae.WBls:0000041.control_median
102.315From_analysisRNASeq.briggsae.WBls:0000041.control_mean
104.384From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
96.4093From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:0000063138.602From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
76.1811From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
77.4382From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
80.4713From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
87.9545From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
92.1294From_analysisRNASeq.briggsae.WBls:0000063.control_mean
108.603From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
84.2129From_analysisRNASeq.briggsae.WBls:0000063.control_median
94.875From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:0000101111.438From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
85.3257From_analysisRNASeq.briggsae.total_over_all_stages.control_median
105.471From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
84.6123From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00129254
00129255
00129256
OrthologWBGene00007143Caenorhabditis elegansFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00053582Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00102362Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00190777Caenorhabditis brenneriFrom_analysisInparanoid_8
WormBase-Compara
WBGene00124430Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00193957Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00194039Caenorhabditis brenneriFrom_analysisWormBase-Compara
CBOVI.g6190Caenorhabditis bovisFrom_analysisWormBase-Compara
CBOVI.g7708Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g11838Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g3723Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g15706Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g12413Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g7112Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g13085Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g11424Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g14023Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g1908Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g25044Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g29460Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g29808Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g17810Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00486.g11417Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00486.g11418Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-B0334.3Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold554.g3700Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00748.g15094Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_14171Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_005332Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g02322Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g9626Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20328300Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g5962Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00205638Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00262853Strongyloides rattiFrom_analysisWormBase-Compara
ParalogWBGene00026250Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable catalytic activity; magnesium ion binding activity; and thiamine pyrophosphate binding activity. Is an ortholog of C. elegans hacl-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG02874
Corresponding_CDS_historyCBG02874:bp194
CBG02874:bp255
Corresponding_transcriptCBG02874.1
Other_sequenceTDC00444_2
HBC04262_1
EW744417.1
ACC26630_1
EX014371.1
CB038027.1
EX008088.1
Oden_isotig13560
EW743460.1
XI03833
JI470396.1
FD514793.1
CJC10745_1
ES741723.1
Dviv_isotig12970
Acan_isotig11015
BXC00505_1
CSC00293_1
Tcol_isotig23589
Hbac_isotig01135
Dviv_isotig12971
CBC00468_1
Acan_isotig12153
Tcol_isotig20204
Dviv_isotig12969
PPC05093_1
PP00227
Tcir_isotig20822
Oden_isotig13559
Tcol_isotig25076
FD516008.1
Experimental_infoExpr_patternExpr1062408
Microarray_resultsGPL8303_CB6_WBGene00025843_A
GPL8303_CB6_WBGene00025843_B
GPL14143_CBG02874_1633-1692_0.676_161_C
GPL14143_CBG02874_1750-1809_0.691_147_B
GPL14143_CBG02874_1799-1858_0.800_7_A
Expression_clusterWBPaper00051425:CB_L1_vs_embryo_upregulated
MethodGene