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WormBase Tree Display for Gene: WBGene00025961

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Name Class

WBGene00025961SMapS_parentSequencecb25.fpc0058
IdentityVersion2
NameCGC_nameCbr-vps-11From_analysisInferred_from_orthology
Sequence_nameCBG03015
Molecular_nameCBG03015
CBG03015.1
CBP14646
Other_nameCBG_03015Accession_evidenceNDBHE601438
Public_nameCbr-vps-11
DB_infoDatabaseNDBlocus_tagCBG_03015
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:55WBPerson1971EventImportedInitial conversion from brigace
220 Mar 2018 10:26:11WBPerson4025Name_changeCGC_nameCbr-vps-11
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvps
RNASeq_FPKMWBls:000000211.0118From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
13.834From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
15.4914From_analysisRNASeq.briggsae.WBls:0000002.control_mean
21.6283From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
12.7668From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
13.3004From_analysisRNASeq.briggsae.WBls:0000002.control_median
14.8102From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000321.69From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
22.9384From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
24.1867From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
23.6711From_analysisRNASeq.briggsae.WBls:0000003.control_mean
25.1367From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000413.7928From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
14.8382From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
15.8835From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
14.2304From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
14.4409From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
15.058From_analysisRNASeq.briggsae.WBls:0000004.control_mean
16.9424From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.708135From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
22.1118From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.13637From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
8.6521From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.67615From_analysisRNASeq.briggsae.WBls:0000027.control_median
8.21593From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
8.54306From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003513.8319From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003811.4113From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
11.681From_analysisRNASeq.briggsae.WBls:0000038.control_mean
11.8932From_analysisRNASeq.briggsae.WBls:0000038.control_median
12.3751From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
20.2498From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
2.68772From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004118.1062From_analysisRNASeq.briggsae.WBls:0000041.control_mean
20.7912From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
20.9793From_analysisRNASeq.briggsae.WBls:0000041.control_median
21.1675From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
21.5584From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
8.90754From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
13.0666From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
16.9432From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
17.0724From_analysisRNASeq.briggsae.WBls:0000041.control_mean
18.8672From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006310.2952From_analysisRNASeq.briggsae.WBls:0000063.control_mean
16.7544From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
7.88395From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
8.29379From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
9.06409From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
9.47959From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
10.8481From_analysisRNASeq.briggsae.WBls:0000063.control_mean
13.6129From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
9.27184From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:000010113.3205From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
13.7928From_analysisRNASeq.briggsae.total_over_all_stages.control_median
13.7276From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
13.8124From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00129401
00129402
Ortholog (29)
ParalogWBGene00034243Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in intracellular protein transport and vesicle-mediated transport. Is an ortholog of C. elegans vps-11.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG03015
Corresponding_CDS_historyCBG03015:bp194
Corresponding_transcriptCBG03015.1
Other_sequence (16)
Experimental_infoExpr_patternExpr1056848
Microarray_resultsGPL8303_CB6_WBGene00025961_A
GPL8303_CB6_WBGene00025961_B
GPL14143_CBG03015_2208-2267_0.784_32_C
GPL14143_CBG03015_2401-2460_0.646_299_B
GPL14143_CBG03015_2473-2532_0.803_6_A
MethodGene