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WormBase Tree Display for Gene: WBGene00025962

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Name Class

WBGene00025962SMapS_parentSequencecb25.fpc0058
IdentityVersion2
NameCGC_nameCbr-set-14From_analysisInferred_from_orthology
Sequence_nameCBG03016
Molecular_nameCBG03016
CBG03016.1
CBP29067
Other_nameCBG_03016Accession_evidenceNDBHE601438
Public_nameCbr-set-14
DB_infoDatabaseNDBlocus_tagCBG_03016
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:55WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-set-14
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classset
RNASeq_FPKMWBls:000000221.8564From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
22.1923From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
22.8424From_analysisRNASeq.briggsae.WBls:0000002.control_mean
24.4784From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
23.3354From_analysisRNASeq.briggsae.WBls:0000002.control_median
23.5485From_analysisRNASeq.briggsae.WBls:0000002.control_mean
25.667From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000352.5914From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
56.3214From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
60.0513From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
56.6003From_analysisRNASeq.briggsae.WBls:0000003.control_mean
57.1583From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000419.3871From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
20.762From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
22.1369From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
20.4457From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
21.3376From_analysisRNASeq.briggsae.WBls:0000004.control_mean
21.8535From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
22.8648From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.169793From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.705681From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
12.5503From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
4.47526From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3.04917From_analysisRNASeq.briggsae.WBls:0000027.control_median
4.70461From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.39265From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000357.43957From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000381.49594From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
16.7765From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
7.78116From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
7.88476From_analysisRNASeq.briggsae.WBls:0000038.control_median
7.98835From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
8.51049From_analysisRNASeq.briggsae.WBls:0000038.control_mean
WBls:000004121.5606From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
43.7663From_analysisRNASeq.briggsae.WBls:0000041.control_mean
50.7359From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
50.9092From_analysisRNASeq.briggsae.WBls:0000041.control_median
51.0825From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
51.6864From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
30.8603From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
37.666From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
40.5986From_analysisRNASeq.briggsae.WBls:0000041.control_mean
44.201From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006311.6442From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
11.9789From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
12.5983From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
13.2252From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
14.7679From_analysisRNASeq.briggsae.WBls:0000063.control_mean
24.3929From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
12.9117From_analysisRNASeq.briggsae.WBls:0000063.control_median
16.4202From_analysisRNASeq.briggsae.WBls:0000063.control_mean
24.6814From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010113.7953From_analysisRNASeq.briggsae.total_over_all_stages.control_median
19.9936From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
19.9164From_analysisRNASeq.briggsae.total_over_all_stages.control_median
21.7475From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (25)
ParalogWBGene00031506Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035030Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00038902Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00042791Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Zinc finger, MYND-type; MYND finger; and Tetratricopeptide-like helical domain superfamily. Is an ortholog of C. elegans set-14.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG03016
Corresponding_CDS_historyCBG03016:bp194
Corresponding_transcriptCBG03016.1
Other_sequenceCRC02938_1
CR03307
Experimental_infoExpr_patternExpr1051075
Microarray_resultsGPL8303_CB6_WBGene00025962_A
GPL8303_CB6_WBGene00025962_B
GPL8303_CB6_WBGene00025962_C
GPL14143_CBG03016_601-660_0.808_10_C
GPL14143_CBG03016_718-777_0.820_6_B
GPL14143_CBG03016_973-1032_0.804_13_A
MethodGene