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WormBase Tree Display for Gene: WBGene00026063

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Name Class

WBGene00026063SMapS_parentSequencecb25.fpc0058
IdentityVersion2
NameCGC_nameCbr-xpf-1From_analysisInferred_from_orthology
Sequence_nameCBG03141
Molecular_nameCBG03141
CBG03141.1
CBP45254
Other_nameCBG_03141Accession_evidenceNDBHE601438
Public_nameCbr-xpf-1
DB_infoDatabaseNDBlocus_tagCBG_03141
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:55WBPerson1971EventImportedInitial conversion from brigace
211 Oct 2013 13:01:45WBPerson2970Name_changeCGC_nameCbr-xpf-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classxpf
AlleleWBVar00108055
WBVar00108056
WBVar00108057
WBVar00108058
WBVar00108059
WBVar00108054
RNASeq_FPKMWBls:000000214.4415From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
14.678From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
14.7578From_analysisRNASeq.briggsae.WBls:0000002.control_mean
15.154From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
14.916From_analysisRNASeq.briggsae.WBls:0000002.control_median
15.6683From_analysisRNASeq.briggsae.WBls:0000002.control_mean
18.3995From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000310.7217From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
12.02From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
9.42331From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
11.0841From_analysisRNASeq.briggsae.WBls:0000003.control_mean
11.8089From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000043.64338From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
3.99244From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
4.34151From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
4.0218From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
4.25104From_analysisRNASeq.briggsae.WBls:0000004.control_mean
4.5092From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
4.73933From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.371138From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1.07941From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
2.33824From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.56418From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.1436From_analysisRNASeq.briggsae.WBls:0000027.control_median
2.55563From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3.2078From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000355.0145From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000381.48767From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
4.34156From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
4.89027From_analysisRNASeq.briggsae.WBls:0000038.control_mean
5.50021From_analysisRNASeq.briggsae.WBls:0000038.control_median
6.65886From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
7.073From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004122.696From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
37.1475From_analysisRNASeq.briggsae.WBls:0000041.control_mean
40.6083From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
41.1477From_analysisRNASeq.briggsae.WBls:0000041.control_median
41.687From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
43.5989From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
31.0918From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
32.7926From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
35.4124From_analysisRNASeq.briggsae.WBls:0000041.control_mean
36.7005From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006311.5514From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
11.6145From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
12.0766From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
12.7128From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
13.7427From_analysisRNASeq.briggsae.WBls:0000063.control_mean
20.7584From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
12.3947From_analysisRNASeq.briggsae.WBls:0000063.control_median
13.882From_analysisRNASeq.briggsae.WBls:0000063.control_mean
14.5781From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010111.7765From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
7.073From_analysisRNASeq.briggsae.total_over_all_stages.control_median
12.2807From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
8.24815From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00129509
00129510
Contained_in_operonCBOPA0592
Ortholog (33)
Structured_descriptionAutomated_descriptionPredicted to enable DNA binding activity and nuclease activity. Is an ortholog of C. elegans xpf-1. In C. elegans, xpf-1 is involved in DNA damage response; meiotic nuclear division; and regulation of multicellular organismal development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG03141
Corresponding_CDS_historyCBG03141:bp255
Corresponding_transcriptCBG03141.1
Other_sequence (33)
Experimental_infoExpr_patternExpr1063172
Microarray_resultsGPL8303_CB6_WBGene00026063_A
GPL8303_CB6_WBGene00026063_B
GPL14143_CBG03141_203-262_0.784_33_A
GPL14143_CBG03141_704-763_0.768_63_C
GPL14143_CBG03141_782-841_0.801_8_B
MethodGene