WormBase Tree Display for Gene: WBGene00026199

WBGene00026199 SMap: S_parent: Sequence: cb25.fpc0063
  Identity: Version: 2
    Name: CGC_name: Cbr-ccr-4 From_analysis: Inferred_from_orthology
      Sequence_name: CBG03318
      Molecular_name: CBG03318
        CBG03318.1
        CBP38484
      Other_name: CBG_03318 Accession_evidence: NDB HE601244
      Public_name: Cbr-ccr-4
    DB_info: Database: NDB locus_tag CBG_03318
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:55 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-ccr-4
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ccr
    RNASeq_FPKM: WBls:0000002 101.643 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        109.397 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        117.043 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        78.4887 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        112.979 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        113.22 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        146.987 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
      WBls:0000003 371.301 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        399.531 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        427.762 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBls:0000003.control_median
        410.743 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        433.165 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 197.034 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        198.514 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        199.994 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
            RNASeq.briggsae.WBls:0000004.control_median
        190.278 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        203.278 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        209.786 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        219.3 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 110.983 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        23.9988 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        47.9207 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        8.78017 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        44.432 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        52.1568 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        64.8653 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 63.6273 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 20.2987 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        49.1888 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        55.4833 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        57.0912 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        58.6991 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        62.2742 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
      WBls:0000041 160.56 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        174.723 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        181.081 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        187.438 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        191.776 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        88.3013 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        134.949 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        135.574 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        71.0322 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        96.4248 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 120.766 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        85.7584 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        86.3471 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        87.2357 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        88.9284 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        93.8071 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        88.082 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        94.28 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        96.6441 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 111.928 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        86.3471 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        125.642 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        88.6149 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
    GO_annotation: 00129677
    Contained_in_operon: CBOPA0585
    Ortholog (30)
    Paralog: WBGene00028881 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00037748 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable catalytic activity. Is an ortholog of C. elegans ccr-4. In C. elegans, ccr-4 is involved in nuclear-transcribed mRNA poly(A) tail shortening. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG03318
    Corresponding_CDS_history: CBG03318:bp255
    Corresponding_transcript: CBG03318.1
    Other_sequence (27)
  Experimental_info: Expr_pattern: Expr1061106
    Microarray_results: GPL8303_CB6_WBGene00026199_A
      GPL14143_CBG03318_1609-1668_0.881_34_C
      GPL14143_CBG03318_1925-1984_0.927_10_B
      GPL14143_CBG03318_2076-2135_0.895_24_A
  Method: Gene