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WormBase Tree Display for Gene: WBGene00026203

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Name Class

WBGene00026203SMapS_parentSequencecb25.fpc0063
IdentityVersion3
NameCGC_nameCbr-thn-1From_analysisInferred_from_orthology
Sequence_nameCBG03322
Molecular_nameCBG03322
CBG03322.1
CBP00893
Other_nameCBG_03322Accession_evidenceNDBHE601244
Public_nameCbr-thn-1
DB_infoDatabaseNDBlocus_tagCBG_03322
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:55WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-thn-1
331 Aug 2016 10:30:13WBPerson4025EventSplit_intoWBGene00270560
Split_intoWBGene00270560
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classthn
RNASeq_FPKMWBls:000000212.235From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
1.44616From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
23.614From_analysisRNASeq.briggsae.WBls:0000002.control_mean
57.161From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
10.3974From_analysisRNASeq.briggsae.WBls:0000002.control_median
19.8505From_analysisRNASeq.briggsae.WBls:0000002.control_mean
8.55986From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000030.23342From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
0.580828From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.928236From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0.387219From_analysisRNASeq.briggsae.WBls:0000003.control_mean
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000040From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.203696From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.520958From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
0.602451From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.0827From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
0.801829From_analysisRNASeq.briggsae.WBls:0000027.control_median
190.992From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
48.1998From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:0000035296.312From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003813.8181From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
201.337From_analysisRNASeq.briggsae.WBls:0000038.control_median
298.797From_analysisRNASeq.briggsae.WBls:0000038.control_mean
388.857From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
782.711From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
9.80047From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004112.1769From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
21.3228From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
22.0105From_analysisRNASeq.briggsae.WBls:0000041.control_median
22.6983From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
23.5624From_analysisRNASeq.briggsae.WBls:0000041.control_mean
38.0517From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
16.3859From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
27.4413From_analysisRNASeq.briggsae.WBls:0000041.control_mean
54.012From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006312.6828From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
15.6648From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
18.2314From_analysisRNASeq.briggsae.WBls:0000063.control_mean
20.2816From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
35.3777From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
7.15029From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
14.5663From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
15.1156From_analysisRNASeq.briggsae.WBls:0000063.control_median
17.6206From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010112.1769From_analysisRNASeq.briggsae.total_over_all_stages.control_median
60.9698From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
10.9887From_analysisRNASeq.briggsae.total_over_all_stages.control_median
54.0169From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (38)
ParalogWBGene00039172Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00032269Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00039173Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00026202Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00039174Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00270560Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs affected by Cbr-spr-4 based on RNA-seq studies. Is predicted to encode a protein with the following domains: Osmotin/thaumatin-like superfamily and Thaumatin family. Is an ortholog of C. elegans thn-1. In C. elegans, thn-1 is involved in defense response to Gram-negative bacterium and innate immune response.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG03322
Corresponding_CDS_historyCBG03322:bp255
Corresponding_transcriptCBG03322.1
Other_sequenceCBC01692_1
CR01128
CBC11064_1
CRC11906_1
CJC00255_1
Experimental_infoExpr_patternExpr1056645
Microarray_resultsGPL14143_CBG03322_47-106_0.891_5_B
GPL14143_CBG03322_155-214_0.808_28_C
GPL14143_CBG03322_454-513_0.765_40_A
Expression_clusterWBPaper00051137:Santeuil-virus_upregulated_JU1264
WBPaper00059178:Cbr-spr-4(gu163)_upregulated
MethodGene