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WormBase Tree Display for Gene: WBGene00026271

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Name Class

WBGene00026271SMapS_parentSequencecb25.fpc0063
IdentityVersion2
NameCGC_nameCbr-rack-1From_analysisInferred_from_orthology
Sequence_nameCBG03402
Molecular_nameCBG03402a
CBG03402a.1
CBP00888
CBG03402b
CBP38344
CBG03402b.1
Other_nameCBG_03402Accession_evidenceNDBHE601244
Public_nameCbr-rack-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:55WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-rack-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrack
RNASeq_FPKMWBls:00000022742.85From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
2792.42From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
2889.82From_analysisRNASeq.briggsae.WBls:0000002.control_mean
3134.2From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
2501.02From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
2767.64From_analysisRNASeq.briggsae.WBls:0000002.control_median
2792.62From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:0000003454.314From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
464.824From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
475.334From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
466.105From_analysisRNASeq.briggsae.WBls:0000003.control_mean
468.666From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:0000004877.848From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
919.301From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
960.754From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
1072.36From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
800.326From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
922.267From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
926.711From_analysisRNASeq.briggsae.WBls:0000004.control_mean
WBls:0000024 (12)
WBls:00000271539.91From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1612.6From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2025.01From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2922.52From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
2267.56From_analysisRNASeq.briggsae.WBls:0000027.control_median
2278.56From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3039.2From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000353805.16From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000381821.88From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
3263.21From_analysisRNASeq.briggsae.WBls:0000038.control_mean
3391.1From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
3645.17From_analysisRNASeq.briggsae.WBls:0000038.control_median
3899.23From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
3940.64From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:00000411837.41From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
1933.3From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
1987.33From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1989.29From_analysisRNASeq.briggsae.WBls:0000041.control_median
2045.28From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
2133.33From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
1666.56From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
1736.34From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
1885.35From_analysisRNASeq.briggsae.WBls:0000041.control_median
1892.04From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:00000632102.95From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
2158.75From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
2169.89From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
2386.01From_analysisRNASeq.briggsae.WBls:0000063.control_mean
2491.56From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
3006.88From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2330.73From_analysisRNASeq.briggsae.WBls:0000063.control_median
2459.58From_analysisRNASeq.briggsae.WBls:0000063.control_mean
2827.46From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001012169.89From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2456.02From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
2146.04From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2269.97From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (32)
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: WD domain, G-beta repeat; WD40-repeat-containing domain superfamily; G-protein beta WD-40 repeat; WD40/YVTN repeat-like-containing domain superfamily; and WD40 repeat. Is an ortholog of C. elegans rack-1. In C. elegans, rack-1 is involved in several processes, including antifungal innate immune response; cytoskeleton-dependent cytokinesis; and motor neuron axon guidance.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG03402a
CBG03402b
Corresponding_CDS_historyCBG03402:bp194
Corresponding_transcriptCBG03402a.1
CBG03402b.1
Other_sequence (384)
Experimental_infoExpr_patternExpr1059135
Microarray_resultsGPL8303_CB6_WBGene00026271_A
GPL8303_CB6_WBGene00026271_B
GPL14143_CBG03402_392-451_0.887_9_C
GPL14143_CBG03402_655-714_0.832_10_B
GPL14143_CBG03402_817-876_0.965_1_A
Expression_clusterWBPaper00051425:CB_L4_vs_embryo_upregulated
MethodGene