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WormBase Tree Display for Gene: WBGene00026468

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Name Class

WBGene00026468SMapS_parentSequencecb25.fpc0071a
IdentityVersion2
NameCGC_nameCbr-gtf-2F1From_analysisInferred_from_orthology
Sequence_nameCBG03654
Molecular_nameCBG03654
CBG03654.1
CBP06642
Other_nameCBG_03654Accession_evidenceNDBHE600948
Public_nameCbr-gtf-2F1
DB_infoDatabaseNDBlocus_tagCBG_03654
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:56WBPerson1971EventImportedInitial conversion from brigace
208 Feb 2019 15:42:26WBPerson1983Name_changeCGC_nameCbr-gtf-2F1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgtf
AlleleWBVar00108669
WBVar00108670
WBVar00108671
WBVar00108672
RNASeq_FPKMWBls:000000210.2339From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
43.5015From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
47.686From_analysisRNASeq.briggsae.WBls:0000002.control_mean
89.3226From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
34.3411From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
38.9213From_analysisRNASeq.briggsae.WBls:0000002.control_median
44.3498From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:0000003101.021From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
124.642From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
77.3998From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
80.8186From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
94.2868From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000427.835From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
30.0089From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
32.1829From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
23.8193From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
29.4108From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
30.5092From_analysisRNASeq.briggsae.WBls:0000004.control_mean
39.2981From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002712.98From_analysisRNASeq.briggsae.WBls:0000027.control_mean
13.8726From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
18.7968From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
6.27065From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
16.3347From_analysisRNASeq.briggsae.WBls:0000027.control_median
21.2664From_analysisRNASeq.briggsae.WBls:0000027.control_mean
46.1254From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003542.3154From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003816.1936From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
42.4369From_analysisRNASeq.briggsae.WBls:0000038.control_median
42.5661From_analysisRNASeq.briggsae.WBls:0000038.control_mean
68.6802From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
7.26819From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
78.1223From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:000004157.1734From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
58.8987From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
59.0938From_analysisRNASeq.briggsae.WBls:0000041.control_median
59.2889From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
59.4204From_analysisRNASeq.briggsae.WBls:0000041.control_mean
62.3208From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
58.8648From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
59.846From_analysisRNASeq.briggsae.WBls:0000041.control_mean
62.5291From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:000006333.874From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
35.194From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
36.5412From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
40.8329From_analysisRNASeq.briggsae.WBls:0000063.control_mean
42.7361From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
55.8193From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
39.6386From_analysisRNASeq.briggsae.WBls:0000063.control_median
41.979From_analysisRNASeq.briggsae.WBls:0000063.control_mean
47.7097From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010141.6402From_analysisRNASeq.briggsae.total_over_all_stages.control_median
43.7597From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
41.9778From_analysisRNASeq.briggsae.total_over_all_stages.control_median
44.525From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00129983
00129984
00129985
00129986
Contained_in_operonCBOPA0677
Ortholog (31)
Structured_descriptionAutomated_descriptionPredicted to enable DNA binding activity. Predicted to be involved in positive regulation of transcription elongation by RNA polymerase II and transcription initiation at RNA polymerase II promoter. Predicted to be located in nucleus. Is an ortholog of C. elegans gtf-2F1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG03654
Corresponding_CDS_historyCBG03654:bp194
Corresponding_transcriptCBG03654.1
Other_sequence (66)
Experimental_infoExpr_patternExpr1069613
Microarray_resultsGPL8303_CB6_WBGene00026468_A
GPL8303_CB6_WBGene00026468_B
GPL14143_CBG03654_48-107_0.599_157_C
GPL14143_CBG03654_494-553_0.808_11_B
GPL14143_CBG03654_733-792_0.804_14_A
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_upregulated
MethodGene