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WormBase Tree Display for Gene: WBGene00027015

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Name Class

WBGene00027015SMapS_parentSequencecb25.fpc0072a
IdentityVersion2
NameCGC_nameCbr-vps-33.2From_analysisInferred_from_orthology
Sequence_nameCBG04314
Molecular_nameCBG04314
CBG04314.1
CBP48452
Other_nameCBG_04314Accession_evidenceNDBHE600920
Public_nameCbr-vps-33.2
DB_infoDatabaseNDBlocus_tagCBG_04314
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:56WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-vps-33.2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvps
RNASeq_FPKMWBls:000000211.0356From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
11.6331From_analysisRNASeq.briggsae.WBls:0000002.control_mean
14.1353From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
9.72835From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
12.1557From_analysisRNASeq.briggsae.WBls:0000002.control_mean
12.3795From_analysisRNASeq.briggsae.WBls:0000002.control_median
13.7234From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000311.1547From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
14.6004From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
18.0462From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
10.6187From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
13.2732From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000410.4805From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
8.90148From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
9.69099From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
10.4057From_analysisRNASeq.briggsae.WBls:0000004.control_mean
10.7456From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
12.5225From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
9.37826From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.286281From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1.61572From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
3.4868From_analysisRNASeq.briggsae.WBls:0000027.control_mean
8.55841From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.00797From_analysisRNASeq.briggsae.WBls:0000027.control_median
3.71516From_analysisRNASeq.briggsae.WBls:0000027.control_mean
4.40022From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000358.21795From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003818.9343From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
2.52369From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
5.60256From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
7.62845From_analysisRNASeq.briggsae.WBls:0000038.control_median
9.17872From_analysisRNASeq.briggsae.WBls:0000038.control_mean
9.65434From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:000004117.7927From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
19.2809From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
19.3295From_analysisRNASeq.briggsae.WBls:0000041.control_median
19.378From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
21.6252From_analysisRNASeq.briggsae.WBls:0000041.control_mean
30.0491From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
24.7136From_analysisRNASeq.briggsae.WBls:0000041.control_median
25.9065From_analysisRNASeq.briggsae.WBls:0000041.control_mean
32.0927From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
36.8455From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006313.0292From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
15.0425From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
15.35From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
15.7942From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
16.4196From_analysisRNASeq.briggsae.WBls:0000063.control_mean
22.8823From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
15.5721From_analysisRNASeq.briggsae.WBls:0000063.control_median
16.0671From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
16.3609From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010110.4805From_analysisRNASeq.briggsae.total_over_all_stages.control_median
11.7789From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
10.8906From_analysisRNASeq.briggsae.total_over_all_stages.control_median
12.8417From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00130645
Ortholog (32)
ParalogWBGene00029944Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034298Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035639Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036613Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037807Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in vesicle-mediated transport. Is an ortholog of C. elegans vps-33.2. In C. elegans, vps-33.2 is involved in spermatocyte division.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG04314
Corresponding_CDS_historyCBG04314:bp194
CBG04314:bp260
Corresponding_transcriptCBG04314.1
Other_sequenceTcol_isotig02052
CR04921
Hbac_isotig05781
Dviv_isotig29676
Oden_isotig27960
CRC09241_1
Acan_isotig14752
Experimental_infoExpr_patternExpr1051862
Microarray_resultsGPL8303_CB6_WBGene00027015_A
GPL8303_CB6_WBGene00027015_B
GPL14143_CBG04314_315-374_0.808_1_A
GPL14143_CBG04314_1440-1499_0.806_3_C
GPL14143_CBG04314_1781-1840_0.806_2_B
MethodGene