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WormBase Tree Display for Gene: WBGene00027380

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Name Class

WBGene00027380SMapS_parentSequencecb25.fpc0090
IdentityVersion2
NameCGC_nameCbr-vps-39From_analysisInferred_from_orthology
Sequence_nameCBG04769
Molecular_nameCBG04769
CBG04769.1
CBP45761
Other_nameCBG_04769Accession_evidenceNDBHE601135
Public_nameCbr-vps-39
DB_infoDatabaseNDBlocus_tagCBG_04769
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:56WBPerson1971EventImportedInitial conversion from brigace
220 Mar 2018 10:26:11WBPerson4025Name_changeCGC_nameCbr-vps-39
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvps
AlleleWBVar00036669
WBVar00036654
WBVar00109658
WBVar00036659
WBVar00008499
WBVar00036664
RNASeq_FPKMWBls:000000210.3641From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
11.5121From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
12.3563From_analysisRNASeq.briggsae.WBls:0000002.control_mean
15.1927From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
13.3524From_analysisRNASeq.briggsae.WBls:0000002.control_median
13.7064From_analysisRNASeq.briggsae.WBls:0000002.control_mean
17.7566From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000322.0846From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
25.3718From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
28.659From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
26.6825From_analysisRNASeq.briggsae.WBls:0000003.control_mean
29.304From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000414.4181From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
14.9911From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
15.5642From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
14.6896From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
15.3418From_analysisRNASeq.briggsae.WBls:0000004.control_mean
15.5892From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
16.448From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.597094From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
2.30927From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
4.07266From_analysisRNASeq.briggsae.WBls:0000027.control_mean
9.3116From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.04886From_analysisRNASeq.briggsae.WBls:0000027.control_median
3.78845From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
4.0016From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000355.67015From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000382.17733From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
5.84561From_analysisRNASeq.briggsae.WBls:0000038.control_mean
6.18062From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
6.3344From_analysisRNASeq.briggsae.WBls:0000038.control_median
6.48818From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
8.53633From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004124.6767From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
32.6183From_analysisRNASeq.briggsae.WBls:0000041.control_mean
34.673From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
34.9907From_analysisRNASeq.briggsae.WBls:0000041.control_median
35.3085From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
35.8151From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
26.1015From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
31.361From_analysisRNASeq.briggsae.WBls:0000041.control_mean
31.5915From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
33.1323From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006310.2797From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
10.37From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
7.67132From_analysisRNASeq.briggsae.WBls:0000063.control_mean
8.50331From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
9.20357From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
12.8586From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
8.53586From_analysisRNASeq.briggsae.WBls:0000063.control_mean
9.74164From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:000010112.2091From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
9.20357From_analysisRNASeq.briggsae.total_over_all_stages.control_median
10.3671From_analysisRNASeq.briggsae.total_over_all_stages.control_median
13.7419From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00130943
Ortholog (33)
Structured_descriptionAutomated_descriptionPredicted to be involved in vesicle-mediated transport. Is an ortholog of C. elegans vps-39.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG04769
Corresponding_CDS_historyCBG04769:bp194
CBG04769:bp255
Corresponding_transcriptCBG04769.1
Other_sequence (11)
Experimental_infoExpr_patternExpr1051664
Microarray_resultsGPL8303_CB6_WBGene00027380_A
GPL8303_CB6_WBGene00027380_B
GPL14143_CBG04769_2525-2584_0.919_8_B
GPL14143_CBG04769_2770-2829_0.856_48_C
GPL14143_CBG04769_2812-2871_0.946_2_A
MethodGene