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WormBase Tree Display for Gene: WBGene00027390

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Name Class

WBGene00027390SMapS_parentSequencecb25.fpc0090
IdentityVersion4
NameCGC_nameCbr-mtl-2From_analysisInferred_from_orthology
Sequence_nameCBG04779
Molecular_nameCBG04779
CBG04779.1
CBP44918
CBG04779.2
CBG04779.3
CBG04779.4
Other_nameCBG_04779Accession_evidenceNDBHE601135
Public_nameCbr-mtl-2
DB_infoDatabaseNDBlocus_tagCBG_04779
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:56WBPerson1971EventImportedInitial conversion from brigace
220 Mar 2018 10:26:11WBPerson4025Name_changeCGC_nameCbr-mtl-2
308 Feb 2019 15:42:29WBPerson1983Name_changeCGC_nameRemoved
408 May 2019 10:09:24WBPerson1983Name_changeCGC_nameCbr-mtl-2
528 May 2021 19:05:21WBPerson1983Name_changeCGC_nameRemoved
628 Jul 2021 11:12:28WBPerson1983Name_changeCGC_nameCbr-mtl-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmtl
RNASeq_FPKMWBls:0000002109.5From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
297.571From_analysisRNASeq.briggsae.WBls:0000002.control_mean
337.722From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
445.49From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
223.611From_analysisRNASeq.briggsae.WBls:0000002.control_median
240.017From_analysisRNASeq.briggsae.WBls:0000002.control_mean
67.3574From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000312.6882From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
16.7046From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
20.721From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
13.7861From_analysisRNASeq.briggsae.WBls:0000003.control_mean
7.94913From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000044.7387From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
5.31968From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
5.90066From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
5.31147From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
5.80695From_analysisRNASeq.briggsae.WBls:0000004.control_mean
6.2749From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
6.80901From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000271.28929From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
13.6855From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.20664From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
6.06048From_analysisRNASeq.briggsae.WBls:0000027.control_mean
18.8907From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
8.44607From_analysisRNASeq.briggsae.WBls:0000027.control_median
9.26803From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000352.48835From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003812.5373From_analysisRNASeq.briggsae.WBls:0000038.control_median
13.6357From_analysisRNASeq.briggsae.WBls:0000038.control_mean
16.5306From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
26.3898From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
3.07832From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
8.54405From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:000004151.5358From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
61.6161From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
69.6497From_analysisRNASeq.briggsae.WBls:0000041.control_mean
70.7903From_analysisRNASeq.briggsae.WBls:0000041.control_median
79.9645From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
85.4823From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
204.544From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
82.7234From_analysisRNASeq.briggsae.WBls:0000041.control_median
94.5304From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
96.2788From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:000006310.624From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
10.6351From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
11.4268From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
12.8414From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
9.10546From_analysisRNASeq.briggsae.WBls:0000063.control_mean
11.0309From_analysisRNASeq.briggsae.WBls:0000063.control_median
12.3534From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
9.64678From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010113.6855From_analysisRNASeq.briggsae.total_over_all_stages.control_median
53.6056From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
13.2634From_analysisRNASeq.briggsae.total_over_all_stages.control_median
52.068From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
OrthologWBGene00003474Caenorhabditis elegansFrom_analysisOrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00151369Caenorhabditis brenneriFrom_analysisInparanoid_8
WormBase-Compara
FL83_06429Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_020394Caenorhabditis remaneiFrom_analysisWormBase-Compara
chrV_pilon.g16404Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00057046Caenorhabditis remaneiFrom_analysisWormBase-Compara
ParalogWBGene00271681Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domain: Metallothionein, family 6, nematoda. Is an ortholog of C. elegans mtl-2. In C. elegans, mtl-2 is involved in response to cadmium ion and response to heat.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG04779
Corresponding_CDS_historyCBG04779:bp255
Corresponding_transcriptCBG04779.1
CBG04779.2
CBG04779.3
CBG04779.4
Other_sequenceCBC00932_1
CBC01514_2
FD517649.1
CBC01514_1
CJC01860_1
CSC00487_1
FD517704.1
Experimental_infoExpr_patternExpr1064245
Microarray_resultsGPL8303_CB6_WBGene00027390_B
GPL14143_CBG04779_151-210_0.926_2_B
GPL14143_CBG04779_155-214_0.916_3_C
GPL14143_CBG04779_247-306_0.929_1_A
Remark[190208 pad] The CGC name Cbr-mtl-2 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[210528 pad] The CGC name Cbr-mtl-2 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene