WormBase Tree Display for Gene: WBGene00027837

WBGene00027837 SMap: S_parent: Sequence: cb25.fpc0110
  Identity: Version: 2
    Name: CGC_name: Cbr-nspd-9.1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG05377
      Molecular_name: CBG05377
        CBG05377.1
        CBP07068
      Other_name: CBG_05377 Accession_evidence: NDB HE601369
      Public_name: Cbr-nspd-9.1
    DB_info: Database: NDB locus_tag CBG_05377
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:57 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Mar 2018 10:26:13 WBPerson4025 Name_change: CGC_name: Cbr-nspd-9.1
        3 28 Jul 2021 11:12:30 WBPerson1983 Name_change: CGC_name: Removed
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nspd
    RNASeq_FPKM: WBls:0000002 0.867158 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        0.996083 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        1.60539 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        1.30074 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        19.4533 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        5.51369 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 0 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 0 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 0 From_analysis (12)
      WBls:0000027 0 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
            RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 0 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
            RNASeq.briggsae.WBls:0000038.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
            RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
            RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
            RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
      WBls:0000041 166.946 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        0 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
            RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
            RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        41.7365 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        113.263 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        47.6052 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        62.5699 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        95.2104 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 0 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
            RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0.156625 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.93975 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 0 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        5.84647 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        10.4846 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    Ortholog (65)
    Paralog: WBGene00039798 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00037471 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00037331 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Protein of unknown function DUF780, Caenorhabditis species and Caenorhabditis elegans protein of unknown function (DUF780). Is an ortholog of C. elegans nspd-9. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG05377
    Corresponding_CDS_history: CBG05377:bp194
    Corresponding_transcript: CBG05377.1
    Other_sequence: CJC05614_1
      CRC00819_1
      CRC11547_1
      CR12580
      CR02003
      CR12304
      CJC00550_2
  Experimental_info: Expr_pattern: Expr1066530
    Microarray_results: GPL8303_CB6_WBGene00027837_A
      GPL14143_CBG05377_185-244_0.771_23_A
  Remark: [210728 pad] The CGC name Cbr-nspd-9.1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene