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WormBase Tree Display for Gene: WBGene00027982

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Name Class

WBGene00027982SMapS_parentSequencecb25.fpc0129
IdentityVersion1
NameSequence_nameCBG05554
Molecular_nameCBG05554
CBG05554.1
CBP26564
Other_nameCBG_05554Accession_evidenceNDBHE601419
Public_nameCBG05554
DB_infoDatabaseNDBlocus_tagCBG_05554
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:57WBPerson1971EventImportedInitial conversion from brigace
StatusLive
Gene_infoBiotypeSO:0001217
AlleleWBVar00005492
WBVar00005497
RNASeq_FPKMWBls:000000211.5808From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
19.5803From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
21.9061From_analysisRNASeq.briggsae.WBls:0000002.control_mean
34.5572From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
16.2103From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
17.8953From_analysisRNASeq.briggsae.WBls:0000002.control_median
20.4821From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000341.5169From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
47.8205From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
54.1241From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
31.7697From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
42.4702From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000425.3691From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
26.4361From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
27.5031From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
25.581From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
28.0982From_analysisRNASeq.briggsae.WBls:0000004.control_mean
28.7127From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
33.325From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002711.4821From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.86932From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
8.14281From_analysisRNASeq.briggsae.WBls:0000027.control_mean
9.07702From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
10.2796From_analysisRNASeq.briggsae.WBls:0000027.control_median
12.8079From_analysisRNASeq.briggsae.WBls:0000027.control_mean
26.803From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003515.4365From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003812.6813From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
20.4691From_analysisRNASeq.briggsae.WBls:0000038.control_mean
21.1042From_analysisRNASeq.briggsae.WBls:0000038.control_median
29.527From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
31.4129From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
8.25529From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004117.1744From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
20.0254From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
20.5421From_analysisRNASeq.briggsae.WBls:0000041.control_mean
20.8067From_analysisRNASeq.briggsae.WBls:0000041.control_median
21.5881From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
23.3804From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
16.8975From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
19.9199From_analysisRNASeq.briggsae.WBls:0000041.control_mean
20.2394From_analysisRNASeq.briggsae.WBls:0000041.control_median
20.4534From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006318.4606From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
20.5346From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
21.2808From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
22.9799From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
27.5075From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
20.6065From_analysisRNASeq.briggsae.WBls:0000063.control_mean
22.1304From_analysisRNASeq.briggsae.WBls:0000063.control_median
31.3364From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010120.5964From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
21.2808From_analysisRNASeq.briggsae.total_over_all_stages.control_median
21.7996From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
22.284From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00131408
00131409
Contained_in_operonCBOPA0113
Ortholog (31)
Structured_descriptionAutomated_descriptionPredicted to be involved in ribosomal large subunit biogenesis. Predicted to be located in nucleolus. Is an ortholog of C. elegans T06E6.1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG05554
Corresponding_CDS_historyCBG05554:bp194
Corresponding_transcriptCBG05554.1
Other_sequence (25)
Experimental_infoExpr_patternExpr1065131
Microarray_resultsGPL8303_CB6_WBGene00027982_A
GPL8303_CB6_WBGene00027982_B
GPL14143_CBG05554_512-571_0.579_206_C
GPL14143_CBG05554_731-790_0.901_15_B
GPL14143_CBG05554_906-965_0.905_12_A
MethodGene