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WormBase Tree Display for Gene: WBGene00028315

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Name Class

WBGene00028315SMapS_parentSequencecb25.fpc0143a
IdentityVersion2
NameCGC_nameCbr-lsm-7From_analysisInferred_from_orthology
Sequence_nameCBG05961
Molecular_nameCBG05961
CBG05961.1
CBP07195
Other_nameCBG_05961Accession_evidenceNDBHE600909
Public_nameCbr-lsm-7
DB_infoDatabaseNDBlocus_tagCBG_05961
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:57WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-lsm-7
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlsm
RNASeq_FPKMWBls:0000002104.579From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
139.447From_analysisRNASeq.briggsae.WBls:0000002.control_mean
152.608From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
161.154From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
156.881From_analysisRNASeq.briggsae.WBls:0000002.control_median
168.637From_analysisRNASeq.briggsae.WBls:0000002.control_mean
256.207From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003332.766From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
376.806From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
420.846From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
307.388From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
353.667From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:0000004216.716From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
221.406From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
226.097From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
220.271From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
259.208From_analysisRNASeq.briggsae.WBls:0000004.control_mean
259.781From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
373.175From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002719.1955From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
31.6012From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.12579From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
70.4824From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
37.4839From_analysisRNASeq.briggsae.WBls:0000027.control_median
37.644From_analysisRNASeq.briggsae.WBls:0000027.control_mean
55.7723From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003572.6891From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038122.475From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
63.2549From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
71.3434From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
83.3538From_analysisRNASeq.briggsae.WBls:0000038.control_median
88.1094From_analysisRNASeq.briggsae.WBls:0000038.control_mean
95.3641From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:0000041234.095From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
236.677From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
241.162From_analysisRNASeq.briggsae.WBls:0000041.control_median
242.693From_analysisRNASeq.briggsae.WBls:0000041.control_mean
245.647From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
254.353From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
250From_analysisRNASeq.briggsae.WBls:0000041.control_median
256.625From_analysisRNASeq.briggsae.WBls:0000041.control_mean
258.644From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
310.333From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:0000063120.055From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
133.158From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
175.651From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
191.821From_analysisRNASeq.briggsae.WBls:0000063.control_mean
227.613From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
302.63From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
125.956From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
154.404From_analysisRNASeq.briggsae.WBls:0000063.control_median
180.844From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:0000101133.158From_analysisRNASeq.briggsae.total_over_all_stages.control_median
152.579From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
156.881From_analysisRNASeq.briggsae.total_over_all_stages.control_median
173.482From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (27)
ParalogWBGene00026850Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: LSM domain; LSM domain, eukaryotic/archaea-type; and LSM domain superfamily. Is an ortholog of C. elegans lsm-7.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG05961
Corresponding_CDS_historyCBG05961:bp194
Corresponding_transcriptCBG05961.1
Other_sequence (48)
Experimental_infoExpr_patternExpr1065292
Microarray_resultsGPL8303_CB6_WBGene00028315_A
GPL8303_CB6_WBGene00028315_B
GPL14143_CBG05961_30-89_0.953_1_B
GPL14143_CBG05961_142-201_0.574_14_C
GPL14143_CBG05961_262-321_0.708_10_A
MethodGene