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WormBase Tree Display for Gene: WBGene00028568

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Name Class

WBGene00028568SMapS_parentSequencecb25.fpc0143b
IdentityVersion2
NameCGC_nameCbr-vps-8From_analysisInferred_from_orthology
Sequence_nameCBG06265
Molecular_nameCBG06265
CBG06265.1
CBP01478
Other_nameCBG_06265Accession_evidenceNDBHE600986
Public_nameCbr-vps-8
DB_infoDatabaseNDBlocus_tagCBG_06265
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:58WBPerson1971EventImportedInitial conversion from brigace
227 Jun 2017 01:04:25WBPerson2970Name_changeCGC_nameCbr-vps-8
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvps
RNASeq_FPKMWBls:000000211.034From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
12.3905From_analysisRNASeq.briggsae.WBls:0000002.control_mean
17.2629From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
8.87464From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
10.4919From_analysisRNASeq.briggsae.WBls:0000002.control_median
11.7803From_analysisRNASeq.briggsae.WBls:0000002.control_mean
9.94973From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000310.1971From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
9.52297From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
9.86003From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
10.3424From_analysisRNASeq.briggsae.WBls:0000003.control_mean
11.3072From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000046.69205From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
6.90172From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
7.11139From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
6.75683From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
7.09629From_analysisRNASeq.briggsae.WBls:0000004.control_mean
7.19882From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
7.72237From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.519691From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1.30608From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
13.9019From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
5.24256From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3.1345From_analysisRNASeq.briggsae.WBls:0000027.control_median
4.96291From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
5.17265From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003510.3269From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.953429From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
12.9147From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
6.65533From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
6.99737From_analysisRNASeq.briggsae.WBls:0000038.control_mean
7.06067From_analysisRNASeq.briggsae.WBls:0000038.control_median
7.46601From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:000004115.9337From_analysisRNASeq.briggsae.WBls:0000041.control_mean
16.7063From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
17.6142From_analysisRNASeq.briggsae.WBls:0000041.control_median
18.5221From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
19.0708From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
9.43554From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
10.7154From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
12.0855From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
14.3959From_analysisRNASeq.briggsae.WBls:0000041.control_median
14.4226From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:000006310.7367From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
11.1489From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
12.4307From_analysisRNASeq.briggsae.WBls:0000063.control_mean
13.3644From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
17.4078From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
9.4959From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
10.9428From_analysisRNASeq.briggsae.WBls:0000063.control_median
11.9774From_analysisRNASeq.briggsae.WBls:0000063.control_mean
9.71056From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001019.66971From_analysisRNASeq.briggsae.total_over_all_stages.control_median
9.89992From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
9.67124From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
9.69014From_analysisRNASeq.briggsae.total_over_all_stages.control_median
Ortholog (29)
ParalogWBGene00025601Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Anaphase-promoting complex subunit 4, WD40 domain; Anaphase-promoting complex subunit 4 WD40 domain; Vacuolar protein sorting-associated protein 8, central domain; Golgi CORVET complex core vacuolar protein 8; WD40-repeat-containing domain superfamily; and WD40/YVTN repeat-like-containing domain superfamily. Is an ortholog of C. elegans vps-8.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG06265
Corresponding_CDS_historyCBG06265:bp194
CBG06265:bp255
Corresponding_transcriptCBG06265.1
Other_sequenceJI219838.1
FC540403.1
CRC03555_1
ACC26867_1
CR12685
CBC14004_1
Experimental_infoExpr_patternExpr1059518
Microarray_resultsGPL8303_CB6_WBGene00028568_A
GPL8303_CB6_WBGene00028568_B
GPL8303_CB6_WBGene00028568_C
GPL14143_CBG06265_2057-2116_0.792_131_C
GPL14143_CBG06265_2246-2305_0.729_271_B
GPL14143_CBG06265_3714-3773_0.851_62_A
MethodGene