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WormBase Tree Display for Gene: WBGene00028713

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Name Class

WBGene00028713SMapS_parentSequencecb25.fpc0156
IdentityVersion2
NameCGC_nameCbr-ttb-1From_analysisInferred_from_orthology
Sequence_nameCBG06439
Molecular_nameCBG06439
CBG06439.1
CBP01681
Other_nameCBG_06439Accession_evidenceNDBHE601320
Public_nameCbr-ttb-1
DB_infoDatabaseNDBlocus_tagCBG_06439
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:58WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-ttb-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classttb
RNASeq_FPKMWBls:000000227.6071From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
28.9345From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
28.9666From_analysisRNASeq.briggsae.WBls:0000002.control_mean
30.3582From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
29.6464From_analysisRNASeq.briggsae.WBls:0000002.control_median
32.5371From_analysisRNASeq.briggsae.WBls:0000002.control_mean
43.2485From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003110.13From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
119.839From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
129.548From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
117.258From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
118.979From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000467.7235From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
73.6036From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
79.4837From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
61.5757From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
76.9776From_analysisRNASeq.briggsae.WBls:0000004.control_mean
80.4779From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
95.6271From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:000002417.1604From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
18.7279From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
27.1989From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
31.4619From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
32.0763From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
32.9925From_analysisRNASeq.briggsae.WBls:0000024.control_mean
32.9969From_analysisRNASeq.briggsae.WBls:0000024.control_median
33.9175From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
34.5143From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
23.6176From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
24.2499From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
26.5665From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
WBls:00000271.55695From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
16.7863From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
8.47767From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
8.94031From_analysisRNASeq.briggsae.WBls:0000027.control_mean
12.632From_analysisRNASeq.briggsae.WBls:0000027.control_median
13.4386From_analysisRNASeq.briggsae.WBls:0000027.control_mean
26.9336From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003517.5943From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003813.1999From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
20.5772From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
22.409From_analysisRNASeq.briggsae.WBls:0000038.control_mean
23.4851From_analysisRNASeq.briggsae.WBls:0000038.control_median
26.393From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
29.4661From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:0000041105.019From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
60.4143From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
63.2992From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
64.0517From_analysisRNASeq.briggsae.WBls:0000041.control_median
64.8042From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
73.3842From_analysisRNASeq.briggsae.WBls:0000041.control_mean
112.194From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
73.813From_analysisRNASeq.briggsae.WBls:0000041.control_median
81.4254From_analysisRNASeq.briggsae.WBls:0000041.control_mean
82.8219From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
29.3871From_analysisRNASeq.briggsae.WBls:0000063.control_mean
33.6663From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
35.0173From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
36.3054From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
41.9466From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
27.1975From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
29.0222From_analysisRNASeq.briggsae.WBls:0000063.control_mean
34.3418From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:000010132.0763From_analysisRNASeq.briggsae.total_over_all_stages.control_median
40.6993From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
34.2159From_analysisRNASeq.briggsae.total_over_all_stages.control_median
48.0951From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00132193
00132194
00132195
OrthologWBGene00006648Caenorhabditis elegansFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00062172Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00153165Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00117680Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00104331Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00120121Caenorhabditis japonicaFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00151269Caenorhabditis brenneriFrom_analysisWormBase-Compara
CBOVI.g1516Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g15753Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g16488Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g21998Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g10548Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g16216Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g14328Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g16033Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g3766Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g38Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00042.g2280Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_07797.g21116Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_V.g18328Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g7597Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00417.g11066Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_01600.g21984Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_05421Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_15245Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_019095Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_019097Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_019149Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g05244Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g20270Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40071400Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00234136Brugia malayiFrom_analysisWormBase-Compara
chrV_pilon.g12946Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00082455Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00243613Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00256088Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00297480Trichuris murisFrom_analysisWormBase-Compara
WBGene00298037Trichuris murisFrom_analysisWormBase-Compara
WBGene00299814Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00033945Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable TBP-class protein binding activity. Predicted to be involved in transcription preinitiation complex assembly. Is an ortholog of C. elegans ttb-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG06439
Corresponding_CDS_historyCBG06439:bp194
Corresponding_transcriptCBG06439.1
Other_sequenceCR03710
DA04060
EX013250.1
HC05425
PPC09354_1
Tcir_isotig31285
Tcol_isotig09466
BM174373.1
HCC04951_1
Tcir_isotig03071
CJC18060_1
CRC08642_1
CRC06727_1
XI00564
JO472001.1
Hbac_isotig02918
Tcol_isotig09467
FG349019.1
HG11338
JI460826.1
CBC00579_1
HBC28161_1
HGC00230_1
OVC08949_1
BM174707.1
Oden_isotig19889
Dviv_isotig21706
JI170664.1
Dviv_isotig21707
FE913859.1
DAC02347_1
HC01692
JI469009.1
HG02908
CR03343
BF727598.1
DA04616
JI172998.1
FG349430.1
TMC00699_1
ASC36919_1
JI211444.1
GP02080
GPC03128_1
Tcir_isotig09020
XIC02780_1
XIC01301_1
DAC01382_1
Experimental_infoExpr_patternExpr1069431
Microarray_resultsGPL8303_CB6_WBGene00028713_A
GPL14143_CBG06439_402-461_0.920_2_C
GPL14143_CBG06439_573-632_0.896_15_A
GPL14143_CBG06439_750-809_0.902_11_B
MethodGene