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WormBase Tree Display for Gene: WBGene00029134

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Name Class

WBGene00029134SMapS_parentSequencecb25.fpc0201
IdentityVersion2
NameCGC_nameCbr-lin-12.1From_analysisInferred_from_orthology
Sequence_nameCBG06951
Molecular_nameCBG06951
CBG06951.1
CBP45572
Other_nameCBG_06951Accession_evidenceNDBHE601347
Public_nameCbr-lin-12.1
DB_infoDatabaseNDBlocus_tagCBG_06951
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:58WBPerson1971EventImportedInitial conversion from brigace
220 Mar 2018 10:26:12WBPerson4025Name_changeCGC_nameCbr-lin-12.1
328 Jul 2021 11:12:30WBPerson1983Name_changeCGC_nameRemoved
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlin
AlleleWBVar00006957
WBVar00006962
WBVar00006947
WBVar00006952
RNASeq_FPKMWBls:00000021.67495From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
1.87977From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1.9657From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
1.99867From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
0.662565From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
1.57547From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1.82033From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:000000324.2747From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
28.8403From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
33.4058From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
22.4437From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
26.7081From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000419.7064From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
20.0292From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
20.3519From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
18.8556From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
19.0573From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
20.4099From_analysisRNASeq.briggsae.WBls:0000004.control_mean
24.0785From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.129999From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.353601From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
1.30602From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3.43445From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
0.953331From_analysisRNASeq.briggsae.WBls:0000027.control_median
1.36778From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.55306From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000351.38498From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.327915From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
2.43076From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
2.69973From_analysisRNASeq.briggsae.WBls:0000038.control_mean
2.90929From_analysisRNASeq.briggsae.WBls:0000038.control_median
3.38781From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
4.65242From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000411.82537From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
2.28274From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.31644From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
2.40354From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.49065From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
2.49851From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
2.4878From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.49458From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.63839From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
3.15746From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.536031From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0.714379From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.758943From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.83375From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.903966From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
1.25543From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.660094From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
0.736661From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.804807From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:00001011.9657From_analysisRNASeq.briggsae.total_over_all_stages.control_median
4.86208From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
2.07452From_analysisRNASeq.briggsae.total_over_all_stages.control_median
6.16071From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00132580
Ortholog (48)
Paralog (12)
Structured_descriptionAutomated_descriptionPredicted to enable calcium ion binding activity. Is an ortholog of C. elegans lin-12. In C. elegans, lin-12 is involved in several processes, including egg-laying behavior; nematode larval development; and positive regulation of mesodermal cell fate specification.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG06951
Corresponding_CDS_historyCBG06951:bp194
CBG06951:bp255
Corresponding_transcriptCBG06951.1
Other_sequenceJI165734.1
JI164309.1
Experimental_infoExpr_patternExpr1066780
Microarray_resultsGPL8303_CB6_WBGene00029134_A
GPL14143_CBG06951_2835-2894_0.853_1_A
GPL14143_CBG06951_2941-3000_0.846_3_C
GPL14143_CBG06951_2947-3006_0.852_2_B
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_upregulated
Remark[210728 pad] The CGC name Cbr-lin-12.1 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene