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WormBase Tree Display for Gene: WBGene00029227

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Name Class

WBGene00029227SMapS_parentSequencecb25.fpc0305a
IdentityVersion2
NameCGC_nameCbr-sms-5From_analysisInferred_from_orthology
Sequence_nameCBG07059
Molecular_nameCBG07059
CBG07059.1
CBP15849
Other_nameCBG_07059Accession_evidenceNDBHE600960
Public_nameCbr-sms-5
DB_infoDatabaseNDBlocus_tagCBG_07059
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:58WBPerson1971EventImportedInitial conversion from brigace
208 Feb 2019 15:42:27WBPerson1983Name_changeCGC_nameCbr-sms-5
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsms
RNASeq_FPKMWBls:000000215.1165From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
16.993From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
18.1814From_analysisRNASeq.briggsae.WBls:0000002.control_mean
22.4347From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
16.4208From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
16.7069From_analysisRNASeq.briggsae.WBls:0000002.control_median
17.7412From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.202126From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.404251From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
0.13475From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000040.274068From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
0.548136From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
0.297606From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
0.371987From_analysisRNASeq.briggsae.WBls:0000004.control_mean
0.424997From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
0.589194From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002712.6816From_analysisRNASeq.briggsae.WBls:0000027.control_mean
26.8043From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.15728From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
8.08318From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
17.4437From_analysisRNASeq.briggsae.WBls:0000027.control_median
17.9501From_analysisRNASeq.briggsae.WBls:0000027.control_mean
33.7558From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000359.1616From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003820.1859From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
23.6345From_analysisRNASeq.briggsae.WBls:0000038.control_mean
27.3063From_analysisRNASeq.briggsae.WBls:0000038.control_median
3.28378From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
34.4267From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
36.6418From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000411.74894From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
3.97684From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
4.23409From_analysisRNASeq.briggsae.WBls:0000041.control_median
4.24146From_analysisRNASeq.briggsae.WBls:0000041.control_mean
4.49133From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
6.74872From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
3.93525From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
4.29411From_analysisRNASeq.briggsae.WBls:0000041.control_mean
4.8636From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006310.2458From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
11.3816From_analysisRNASeq.briggsae.WBls:0000063.control_mean
11.4774From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
12.0778From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
14.4981From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
8.60886From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
10.8616From_analysisRNASeq.briggsae.WBls:0000063.control_median
10.8691From_analysisRNASeq.briggsae.WBls:0000063.control_mean
8.30642From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010110.2458From_analysisRNASeq.briggsae.total_over_all_stages.control_median
12.0274From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
10.9839From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
8.45764From_analysisRNASeq.briggsae.total_over_all_stages.control_median
Contained_in_operonCBOPA0240
Ortholog (28)
ParalogWBGene00028463Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029949Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032780Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034707Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: PAP2 superfamily C-terminal and Sphingomyelin synthase-like domain. Is an ortholog of C. elegans sms-5.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG07059
Corresponding_CDS_historyCBG07059:bp194
Corresponding_transcriptCBG07059.1
Other_sequence (14)
Experimental_infoExpr_patternExpr1068770
Microarray_resultsGPL8303_CB6_WBGene00029227_A
GPL8303_CB6_WBGene00029227_B
GPL14143_CBG07059_500-559_0.792_22_C
GPL14143_CBG07059_800-859_0.793_21_B
GPL14143_CBG07059_915-974_0.883_1_A
MethodGene