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WormBase Tree Display for Gene: WBGene00029800

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Name Class

WBGene00029800SMapS_parentSequencecb25.fpc1402a
IdentityVersion2
NameCGC_nameCbr-vps-2From_analysisInferred_from_orthology
Sequence_nameCBG07905
Molecular_nameCBG07905
CBG07905.1
CBP01911
Other_nameCBG_07905Accession_evidenceNDBHE600965
Public_nameCbr-vps-2
DB_infoDatabaseNDBlocus_tagCBG_07905
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:59WBPerson1971EventImportedInitial conversion from brigace
224 Nov 2008 09:32:48WBPerson2970Name_changeCGC_nameCbr-vps-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvps
AlleleWBVar00009222
WBVar00009237
WBVar00009227
WBVar00009242
WBVar00009232
WBVar00009247
RNASeq_FPKMWBls:000000239.2687From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
47.5199From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
51.1939From_analysisRNASeq.briggsae.WBls:0000002.control_mean
66.7932From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
52.7759From_analysisRNASeq.briggsae.WBls:0000002.control_median
52.9034From_analysisRNASeq.briggsae.WBls:0000002.control_mean
58.0319From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003102.009From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
93.9288From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
97.9689From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
76.3352From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
90.7577From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000458.6315From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
62.1212From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
65.6108From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
54.2675From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
56.831From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
61.2848From_analysisRNASeq.briggsae.WBls:0000004.control_mean
71.0832From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002721.957From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
23.716From_analysisRNASeq.briggsae.WBls:0000027.control_mean
41.6958From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
7.49506From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
29.4572From_analysisRNASeq.briggsae.WBls:0000027.control_mean
31.8264From_analysisRNASeq.briggsae.WBls:0000027.control_median
46.6808From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003544.8207From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003817.8133From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
40.4065From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
53.5587From_analysisRNASeq.briggsae.WBls:0000038.control_median
53.652From_analysisRNASeq.briggsae.WBls:0000038.control_mean
66.7108From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
89.6775From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:000004158.1605From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
61.7519From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
61.8685From_analysisRNASeq.briggsae.WBls:0000041.control_median
61.9851From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
67.0077From_analysisRNASeq.briggsae.WBls:0000041.control_mean
86.1331From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
69.7495From_analysisRNASeq.briggsae.WBls:0000041.control_median
73.5366From_analysisRNASeq.briggsae.WBls:0000041.control_mean
77.5138From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
95.6749From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:000006338.508From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
43.7896From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
45.514From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
46.028From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
47.7466From_analysisRNASeq.briggsae.WBls:0000063.control_mean
64.8934From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
45.771From_analysisRNASeq.briggsae.WBls:0000063.control_median
48.227From_analysisRNASeq.briggsae.WBls:0000063.control_mean
50.629From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010152.8963From_analysisRNASeq.briggsae.total_over_all_stages.control_median
52.9411From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
55.8511From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
56.2235From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00133175
Ortholog (31)
ParalogWBGene00025372Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00026737Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00039382Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in vacuolar transport. Is an ortholog of C. elegans vps-2.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG07905
Corresponding_CDS_historyCBG07905:bp194
CBG07905:bp255
Corresponding_transcriptCBG07905.1
Other_sequence (69)
Experimental_infoExpr_patternExpr1051940
Microarray_resultsGPL8303_CB6_WBGene00029800_A
GPL8303_CB6_WBGene00029800_B
GPL14143_CBG07905_214-273_0.858_5_C
GPL14143_CBG07905_293-352_0.870_3_B
GPL14143_CBG07905_418-477_0.882_1_A
MethodGene