WormBase Tree Display for Gene: WBGene00029840

WBGene00029840 SMap: S_parent: Sequence: cb25.fpc1402b
  Identity: Version: 2
    Name: CGC_name: Cbr-pigl-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG07954
      Molecular_name: CBG07954
        CBG07954.1
        CBP34354
      Other_name: CBG_07954 Accession_evidence: NDB HE600996
      Public_name: Cbr-pigl-1
    DB_info: Database: NDB locus_tag CBG_07954
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:59 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 08 Feb 2019 15:42:26 WBPerson1983 Name_change: CGC_name: Cbr-pigl-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pigl
    Allele: WBVar00112909
      WBVar00027774
      WBVar00027759
      WBVar00027729
      WBVar00027744
      WBVar00112910
      WBVar00027714
      WBVar00112911
      WBVar00027719
      WBVar00027749
      WBVar00027734
      WBVar00027779
      WBVar00112906
      WBVar00027764
      WBVar00112907
      WBVar00027739
      WBVar00027769
      WBVar00112908
      WBVar00027709
      WBVar00027754
      WBVar00027724
    RNASeq_FPKM: WBls:0000002 19.691 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        21.8679 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        22.1249 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        23.7879 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        20.0388 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        21.0819 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        21.4107 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 22.6409 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        29.0285 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        35.4161 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        30.1031 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        32.2522 From_analysis: RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 33.2509 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        35.3501 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        37.4492 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
            RNASeq.briggsae.WBls:0000004.control_median
        32.0935 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        36.6246 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        38.9757 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        41.3538 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 11.7779 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
        16.3245 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
        20.0399 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
        23.11 From_analysis: RNASeq.briggsae.WBls:0000024.control_median
        23.5739 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
        25.1996 From_analysis: RNASeq.briggsae.WBls:0000024.control_mean
        26.1801 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
        28.799 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
        38.2541 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
        26.1055 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
        8.37344 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
        8.60572 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
      WBls:0000027 12.4256 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        2.11207 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        27.6285 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        7.53635 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        12.0156 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        13.4429 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        16.4948 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 17.071 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 12.7992 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        16.0219 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        19.4244 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        20.8402 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        22.827 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        31.7125 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
      WBls:0000041 24.7902 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        27.5761 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        29.2728 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        29.4941 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        30.9694 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        34.6408 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        25.3621 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        26.3426 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        26.9594 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        28.2802 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
      WBls:0000063 32.915 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        33.4778 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        36.2427 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        36.3479 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        36.9083 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        42.1955 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        22.1761 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        33.9859 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        34.8602 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
      WBls:0000101 25.2615 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        26.1801 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        25.9914 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        26.2614 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
    Ortholog: WBGene00013131 Caenorhabditis elegans From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00144490 Caenorhabditis brenneri From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00194490 Caenorhabditis brenneri From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00061250 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00130433 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      CBOVI.g9628 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g12425 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g9240 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g10214 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g21149 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g12543 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g4301 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g1736 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g4159 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g4447 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-Y52B11C.1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold597.g5325 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_05346.g34832 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_17962 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_003496 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g10621 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g8059 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10032300 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00227002 Brugia malayi From_analysis: WormBase-Compara
      chrI_pilon.g2205 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00237854 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00262525 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00302789 Trichuris muris From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase; GlcNAc-PI de-N-acetylase; Putative deacetylase LmbE-like domain superfamily; and N-acetylglucosaminyl phosphatidylinositol deacetylase-related. Is an ortholog of C. elegans pigl-1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG07954
    Corresponding_CDS_history: CBG07954:bp194
    Corresponding_transcript: CBG07954.1
    Other_sequence: FC541051.1
      GO239706.1
      Tcol_isotig09347
      ASC03148_1
      ASC13186_1
      Tcol_isotig09346
      Name_isotig03016
      GO240455.1
      Name_isotig03040
      AYC01740_1
      ACC00103_1
      CBC07110_1
      EW741937.1
      FK800497.1
      Tcir_isotig05667
      FC543354.1
      JI467236.1
      ASC09355_1
      AE03389
      Tcir_isotig13363
      CR10343
  Experimental_info: Expr_pattern: Expr1063427
      Expr1065393
    Microarray_results: GPL8303_CB6_WBGene00029840_A
      GPL8303_CB6_WBGene00029840_B
      GPL8303_CB6_WBGene00029841_A
      GPL8303_CB6_WBGene00029841_B
      GPL14143_CBG07954_502-561_0.923_1_A
      GPL14143_CBG07955_363-422_0.918_1_A
  Method: Gene