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WormBase Tree Display for Gene: WBGene00029895

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Name Class

WBGene00029895SMapS_parentSequencecb25.fpc1402b
IdentityVersion3
NameCGC_nameCbr-ndx-8From_analysisInferred_from_orthology
Sequence_nameCBG08022
Molecular_nameCBG08022
CBG08022.1
CBP07815
Other_nameCBG_08022Accession_evidenceNDBHE600996
Public_nameCbr-ndx-8
DB_infoDatabaseNDBlocus_tagCBG_08022
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:59WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:05WBPerson2970Name_changeCGC_nameCbr-ndx-8
331 Aug 2016 10:30:13WBPerson4025EventSplit_intoWBGene00270389
Split_intoWBGene00270389
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classndx
RNASeq_FPKMWBls:00000023.27431From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
3.47717From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
4.05926From_analysisRNASeq.briggsae.WBls:0000002.control_mean
5.4263From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
3.80171From_analysisRNASeq.briggsae.WBls:0000002.control_median
4.07601From_analysisRNASeq.briggsae.WBls:0000002.control_mean
4.12626From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000030.07444From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0.702395From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
1.33035From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.711215From_analysisRNASeq.briggsae.WBls:0000003.control_mean
0.728856From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000041.67283From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
2.12415From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
2.57546From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
1.17615From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
2.1214From_analysisRNASeq.briggsae.WBls:0000004.control_mean
2.19509From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
2.98747From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:00000270.771796From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
2.26207From_analysisRNASeq.briggsae.WBls:0000027.control_mean
6.01442From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.6339From_analysisRNASeq.briggsae.WBls:0000027.control_median
2.32055From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.496From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000352.8252From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.249004From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
2.66869From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
3.75722From_analysisRNASeq.briggsae.WBls:0000038.control_mean
4.07355From_analysisRNASeq.briggsae.WBls:0000038.control_median
5.47842From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
6.63278From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000412.60736From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
3.653From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
3.89581From_analysisRNASeq.briggsae.WBls:0000041.control_median
4.13862From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
4.25064From_analysisRNASeq.briggsae.WBls:0000041.control_mean
6.60357From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
5.31991From_analysisRNASeq.briggsae.WBls:0000041.control_mean
5.3711From_analysisRNASeq.briggsae.WBls:0000041.control_median
7.08938From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
7.82755From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000631.9294From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
2.99434From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
3.349From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
3.66771From_analysisRNASeq.briggsae.WBls:0000063.control_mean
3.71436From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
6.35147From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
3.14371From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
3.24636From_analysisRNASeq.briggsae.WBls:0000063.control_median
3.58038From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:00001013.23419From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
3.27431From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.06903From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.30426From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (27)
ParalogWBGene00025366Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00270389Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs affected by Cbr-spr-4 based on RNA-seq studies. Is predicted to encode a protein with the following domains: NUDIX hydrolase domain; NUDIX domain; and NUDIX hydrolase-like domain superfamily. Is an ortholog of C. elegans ndx-8. In C. elegans, ndx-8 is involved in coenzyme A catabolic process.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG08022
Corresponding_CDS_historyCBG08022:bp194
CBG08022:bp255
Corresponding_transcriptCBG08022.1
Other_sequenceMH10128
Tcol_isotig10262
Tcol_isotig10261
NB08754
Name_isotig07346
MH10134
FC811341.1
SRC01991_1
Experimental_infoExpr_patternExpr1055501
Microarray_resultsGPL8303_CB6_WBGene00029895_A
GPL14143_CBG08022_128-187_0.883_4_C
GPL14143_CBG08022_424-483_0.886_2_B
GPL14143_CBG08022_536-595_0.891_1_A
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_upregulated
MethodGene