WormBase Tree Display for Gene: WBGene00029949

WBGene00029949 SMap: S_parent: Sequence: cb25.fpc1402c
  Identity: Version: 2
    Name: CGC_name: Cbr-sms-2 From_analysis: Inferred_from_orthology
      Sequence_name: CBG08086
      Molecular_name: CBG08086
        CBG08086.1
        CBP01983
      Other_name: CBG_08086 Accession_evidence: NDB HE600971
      Public_name: Cbr-sms-2
    DB_info: Database: NDB locus_tag CBG_08086
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:59 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-sms-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sms
    RNASeq_FPKM: WBls:0000002 6.4564 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        7.69145 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        7.84345 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        8.7745 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        6.11502 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        7.14993 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        7.29734 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 70.7198 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBls:0000003.control_median
        75.3689 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        80.0181 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        59.9699 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        70.2359 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 61.9465 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        65.124 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        68.3015 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        58.2334 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        63.752 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        65.0813 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        65.1973 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 1.22234 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        2.02868 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        3.20007 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        6.3492 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        4.18894 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        4.21124 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        7.24473 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 5.09218 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 1.12194 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        3.45417 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        4.37163 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        4.58724 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        5.72032 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        7.19008 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
      WBls:0000041 2.5974 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        7.56264 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        9.00938 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        9.0795 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        9.14962 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        9.49418 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        3.77928 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        4.04663 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        6.34608 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        6.52801 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
      WBls:0000063 0.487626 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        0.915421 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        1.19021 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        1.26937 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        1.6299 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        1.22979 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        1.46944 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        4.23951 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 14.1502 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        6.4564 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        18.0069 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        6.82324 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
    Ortholog (25)
    Paralog: WBGene00028463 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00029227 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00032780 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00034707 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: PAP2 superfamily C-terminal and Sphingomyelin synthase-like domain. Is an ortholog of C. elegans sms-2. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG08086
    Corresponding_CDS_history: CBG08086:bp194
    Corresponding_transcript: CBG08086.1
    Other_sequence (20)
  Experimental_info: Expr_pattern: Expr1064910
    Microarray_results: GPL8303_CB6_WBGene00029949_A
      GPL8303_CB6_WBGene00029949_B
      GPL14143_CBG08086_492-551_0.854_6_C
      GPL14143_CBG08086_821-880_0.823_13_B
      GPL14143_CBG08086_941-1000_0.875_1_A
  Method: Gene