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WormBase Tree Display for Gene: WBGene00029980

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Name Class

WBGene00029980SMapS_parentSequencecb25.fpc1402c
IdentityVersion2
NameCGC_nameCbr-trap-2From_analysisInferred_from_orthology
Sequence_nameCBG08120
Molecular_nameCBG08120
CBG08120.1
CBP01922
Other_nameCBG_08120Accession_evidenceNDBHE600971
Public_nameCbr-trap-2
DB_infoDatabaseNDBlocus_tagCBG_08120
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:59WBPerson1971EventImportedInitial conversion from brigace
230 Oct 2007 15:14:36WBPerson2970Name_changeCGC_nameCbr-trap-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtrap
RNASeq_FPKMWBls:0000002232.271From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
237.979From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
246.003From_analysisRNASeq.briggsae.WBls:0000002.control_mean
267.759From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
109.629From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
211.91From_analysisRNASeq.briggsae.WBls:0000002.control_mean
235.125From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:0000003289.625From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
399.787From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
509.949From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
238.217From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
345.93From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:0000004828.515From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
894.734From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
960.952From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
1047.16From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
1117.8From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
847.024From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
960.29From_analysisRNASeq.briggsae.WBls:0000004.control_mean
WBls:0000024 (12)
WBls:000002720.7783From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
253.113From_analysisRNASeq.briggsae.WBls:0000027.control_mean
669.77From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
68.7901From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
103.746From_analysisRNASeq.briggsae.WBls:0000027.control_median
138.702From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
224.51From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:0000035447.001From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038217.365From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
240.554From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
245.27From_analysisRNASeq.briggsae.WBls:0000038.control_median
249.986From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
399.41From_analysisRNASeq.briggsae.WBls:0000038.control_mean
889.736From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:0000041106.987From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
119.512From_analysisRNASeq.briggsae.WBls:0000041.control_mean
123.675From_analysisRNASeq.briggsae.WBls:0000041.control_median
140.363From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
148.899From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
81.7991From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
103.478From_analysisRNASeq.briggsae.WBls:0000041.control_mean
68.8651From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
73.9515From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
94.3931From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
205.016From_analysisRNASeq.briggsae.WBls:0000063.control_mean
242.434From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
246.863From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
256.014From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
279.769From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
203.645From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
204.788From_analysisRNASeq.briggsae.WBls:0000063.control_mean
244.648From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:0000101249.986From_analysisRNASeq.briggsae.total_over_all_stages.control_median
338.676From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
244.648From_analysisRNASeq.briggsae.total_over_all_stages.control_median
359.647From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00133387
00133388
Ortholog (28)
ParalogWBGene00026283Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be located in endoplasmic reticulum and membrane. Is an ortholog of C. elegans trap-2.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG08120
Corresponding_CDS_historyCBG08120:bp194
CBG08120:bp255
Corresponding_transcriptCBG08120.1
Other_sequence (66)
Experimental_infoExpr_patternExpr1061062
Microarray_resultsGPL8303_CB6_WBGene00029980_A
GPL8303_CB6_WBGene00029980_B
GPL14143_CBG08120_60-119_0.888_6_B
GPL14143_CBG08120_353-412_0.915_1_C
GPL14143_CBG08120_449-508_0.909_3_A
MethodGene