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WormBase Tree Display for Gene: WBGene00030055

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Name Class

WBGene00030055SMapS_parentSequencecb25.fpc1417
IdentityVersion2
NameCGC_nameCbr-cdc-48.3From_analysisInferred_from_orthology
Sequence_nameCBG08216
Molecular_nameCBG08216
CBG08216.1
CBP02015
Other_nameCBG_08216Accession_evidenceNDBHE601064
Public_nameCbr-cdc-48.3
DB_infoDatabaseNDBlocus_tagCBG_08216
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:59WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-cdc-48.3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcdc
AlleleWBVar00113227
WBVar00113228
WBVar00113229
WBVar00113225
WBVar00113226
RNASeq_FPKMWBls:000000210.6684From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
13.3844From_analysisRNASeq.briggsae.WBls:0000002.control_mean
14.1771From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
15.3078From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
13.6949From_analysisRNASeq.briggsae.WBls:0000002.control_mean
14.4017From_analysisRNASeq.briggsae.WBls:0000002.control_median
14.6264From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000312.487From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
13.6868From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
14.8866From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
13.6914From_analysisRNASeq.briggsae.WBls:0000003.control_mean
13.7007From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000047.70447From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
8.41169From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
9.11891From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
7.92097From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
8.32512From_analysisRNASeq.briggsae.WBls:0000004.control_mean
8.36114From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
8.5201From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.338863From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
13.427From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.61161From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
5.12582From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.23128From_analysisRNASeq.briggsae.WBls:0000027.control_median
6.0571From_analysisRNASeq.briggsae.WBls:0000027.control_mean
8.85094From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000356.52865From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003816.3105From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
1.77618From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
8.57047From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
8.62912From_analysisRNASeq.briggsae.WBls:0000038.control_median
8.68777From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
8.83623From_analysisRNASeq.briggsae.WBls:0000038.control_mean
WBls:000004115.5662From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
30.2719From_analysisRNASeq.briggsae.WBls:0000041.control_mean
32.1367From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
33.9806From_analysisRNASeq.briggsae.WBls:0000041.control_median
35.8245From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
37.5601From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
17.4924From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
23.967From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
27.0912From_analysisRNASeq.briggsae.WBls:0000041.control_mean
28.0518From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006314.1504From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
16.3836From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
16.5261From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
18.3532From_analysisRNASeq.briggsae.WBls:0000063.control_mean
18.5112From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
26.1948From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
16.1428From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
16.4548From_analysisRNASeq.briggsae.WBls:0000063.control_median
17.9848From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010113.9429From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
14.1504From_analysisRNASeq.briggsae.total_over_all_stages.control_median
13.7875From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
13.9256From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00133464
00133465
Ortholog (30)
ParalogWBGene00024089Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00026009Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029361Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00030531Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00039717Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00039892Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable ATP binding activity and ATP hydrolysis activity. Is an ortholog of C. elegans cdc-48.3.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG08216
Corresponding_CDS_historyCBG08216:bp194
CBG08216:bp255
Corresponding_transcriptCBG08216.1
Other_sequence (24)
Experimental_infoExpr_patternExpr1059932
Microarray_resultsGPL8303_CB6_WBGene00030055_A
GPL14143_CBG08216_1746-1805_0.906_9_C
GPL14143_CBG08216_2051-2110_0.923_3_A
GPL14143_CBG08216_2161-2220_0.778_146_B
MethodGene