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WormBase Tree Display for Gene: WBGene00030561

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Name Class

WBGene00030561SMapS_parentSequencecb25.fpc2114
IdentityVersion2
NameCGC_nameCbr-nex-4From_analysisInferred_from_orthology
Sequence_nameCBG08840
Molecular_nameCBG08840a
CBG08840a.1
CBP41652
CBG08840b
CBP40133
CBG08840b.1
Other_nameCBG_08840Accession_evidenceNDBHE601187
Public_nameCbr-nex-4
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:00WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-nex-4
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnex
Allele (40)
RNASeq_FPKMWBls:00000021.97293From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
4.10009From_analysisRNASeq.briggsae.WBls:0000002.control_mean
4.86243From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
5.46492From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
1.77226From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
3.41768From_analysisRNASeq.briggsae.WBls:0000002.control_median
3.51814From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000031.26411From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
1.27793From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
1.29174From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0.761166From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
1.10567From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000044.94172From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
5.02881From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
5.1159From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
3.21599From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
3.421From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
4.44516From_analysisRNASeq.briggsae.WBls:0000004.control_mean
5.53119From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000271.33799From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
14.832From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
5.96613From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
7.37871From_analysisRNASeq.briggsae.WBls:0000027.control_mean
10.0128From_analysisRNASeq.briggsae.WBls:0000027.control_mean
10.3991From_analysisRNASeq.briggsae.WBls:0000027.control_median
17.9152From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003510.5908From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003811.8804From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
1.95567From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
2.67895From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
4.06634From_analysisRNASeq.briggsae.WBls:0000038.control_median
5.45373From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
5.49219From_analysisRNASeq.briggsae.WBls:0000038.control_mean
WBls:00000410.534953From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.605043From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.641641From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.678239From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
1.655From_analysisRNASeq.briggsae.WBls:0000041.control_mean
4.80177From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
2.24642From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.42901From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.81461From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
4.13947From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.546351From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.72244From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.727808From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.885913From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
1.45213From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.806861From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.934195From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.99297From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001012.67895From_analysisRNASeq.briggsae.total_over_all_stages.control_median
5.47872From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
3.3185From_analysisRNASeq.briggsae.total_over_all_stages.control_median
5.30123From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00133947
00133948
Ortholog (29)
ParalogWBGene00037555Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040014Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00042679Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable calcium ion binding activity and calcium-dependent phospholipid binding activity. Is an ortholog of C. elegans nex-4.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG08840a
CBG08840b
Corresponding_CDS_historyCBG08840:bp194
CBG08840:bp255
Corresponding_transcriptCBG08840a.1
CBG08840b.1
Other_sequence (14)
Experimental_infoExpr_patternExpr1069956
Microarray_resultsGPL8303_CB6_WBGene00030561_A
GPL8303_CB6_WBGene00030561_B
GPL14143_CBG08840_627-686_0.920_9_B
GPL14143_CBG08840_821-880_0.776_81_C
GPL14143_CBG08840_922-981_0.796_70_A
MethodGene