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WormBase Tree Display for Gene: WBGene00030894

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Name Class

WBGene00030894SMapS_parentSequencecb25.fpc2220a
IdentityVersion1
NameCGC_nameCbr-syf-3From_analysisInferred_from_orthology
Sequence_nameCBG09283
Molecular_nameCBG09283a
CBG09283a.1
CBP45147
CBG09283b
CBP02271
CBG09283b.1
Other_nameCBG_09283Accession_evidenceNDBHE600954
Public_nameCBG09283
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:00WBPerson1971EventImportedInitial conversion from brigace
228 May 2021 19:05:19WBPerson1983Name_changeCGC_nameCbr-syf-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsyf
RNASeq_FPKMWBls:000000229.1531From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
35.3829From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
35.4973From_analysisRNASeq.briggsae.WBls:0000002.control_mean
41.9558From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
32.5555From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
33.9692From_analysisRNASeq.briggsae.WBls:0000002.control_median
34.7618From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:0000003143.153From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
165.023From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
186.893From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
155.64From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
161.895From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000465.6722From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
72.6879From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
79.7035From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
68.045From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
71.5716From_analysisRNASeq.briggsae.WBls:0000004.control_mean
71.579From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
72.8581From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002710.2845From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.23585From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
24.484From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
5.13366From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
13.5142From_analysisRNASeq.briggsae.WBls:0000027.control_mean
14.1686From_analysisRNASeq.briggsae.WBls:0000027.control_median
23.2035From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003528.3781From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003825.008From_analysisRNASeq.briggsae.WBls:0000038.control_mean
26.0058From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
28.4024From_analysisRNASeq.briggsae.WBls:0000038.control_median
30.799From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
35.4312From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
7.79595From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004142.3988From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
72.1746From_analysisRNASeq.briggsae.WBls:0000041.control_mean
79.7579From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
80.2031From_analysisRNASeq.briggsae.WBls:0000041.control_median
80.6483From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
85.8935From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
51.8325From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
58.5357From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
66.5111From_analysisRNASeq.briggsae.WBls:0000041.control_mean
69.1468From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
23.1638From_analysisRNASeq.briggsae.WBls:0000063.control_mean
26.4001From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
27.8061From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
30.1377From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
31.4752From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
25.6467From_analysisRNASeq.briggsae.WBls:0000063.control_mean
28.9719From_analysisRNASeq.briggsae.WBls:0000063.control_median
38.0612From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010131.4752From_analysisRNASeq.briggsae.total_over_all_stages.control_median
44.1105From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
35.3978From_analysisRNASeq.briggsae.total_over_all_stages.control_median
48.724From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00134327
Ortholog (33)
ParalogWBGene00028014Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032996Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in RNA processing. Is an ortholog of C. elegans syf-3.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG09283a
CBG09283b
Corresponding_CDS_historyCBG09283:bp194
CBG09283:bp255
Corresponding_transcriptCBG09283a.1
CBG09283b.1
Other_sequence (73)
Experimental_infoExpr_patternExpr1064214
Microarray_resultsGPL8303_CB6_WBGene00030894_A
GPL8303_CB6_WBGene00030894_B
GPL14143_CBG09283_1609-1668_0.913_24_C
GPL14143_CBG09283_1720-1779_0.903_29_B
GPL14143_CBG09283_1740-1799_0.921_18_A
MethodGene