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WormBase Tree Display for Gene: WBGene00031354

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Name Class

WBGene00031354SMapS_parentSequencecb25.fpc2234
IdentityVersion2
NameCGC_nameCbr-set-27From_analysisInferred_from_orthology
Sequence_nameCBG09838
Molecular_nameCBG09838
CBG09838.1
CBP41756
Other_nameCBG_09838Accession_evidenceNDBHE601459
Public_nameCbr-set-27
DB_infoDatabaseNDBlocus_tagCBG_09838
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:00WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-set-27
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classset
RNASeq_FPKMWBls:000000225.3543From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
40.2211From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
40.2967From_analysisRNASeq.briggsae.WBls:0000002.control_mean
55.3146From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
40.8507From_analysisRNASeq.briggsae.WBls:0000002.control_mean
41.367From_analysisRNASeq.briggsae.WBls:0000002.control_median
42.5129From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000339.3113From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
44.5499From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
49.7885From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
46.3973From_analysisRNASeq.briggsae.WBls:0000003.control_mean
50.092From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000471.2737From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
73.2587From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
75.2437From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
71.9696From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
75.921From_analysisRNASeq.briggsae.WBls:0000004.control_mean
77.92From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
83.1979From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002724.9971From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.6522From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
6.09542From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
66.2437From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
14.6267From_analysisRNASeq.briggsae.WBls:0000027.control_median
23.1579From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
24.5373From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003526.4181From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003817.6988From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
20.9098From_analysisRNASeq.briggsae.WBls:0000038.control_median
24.1209From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
32.4507From_analysisRNASeq.briggsae.WBls:0000038.control_mean
78.7415From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
9.24161From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004125.5873From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
60.5115From_analysisRNASeq.briggsae.WBls:0000041.control_mean
68.828From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
70.49From_analysisRNASeq.briggsae.WBls:0000041.control_median
72.152From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
75.4788From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
30.602From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
39.6603From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
52.0514From_analysisRNASeq.briggsae.WBls:0000041.control_mean
54.2441From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006326.0284From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
33.105From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
33.6257From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
37.4842From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
37.678From_analysisRNASeq.briggsae.WBls:0000063.control_mean
58.1467From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
34.1529From_analysisRNASeq.briggsae.WBls:0000063.control_median
34.68From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
37.1783From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010133.6257From_analysisRNASeq.briggsae.total_over_all_stages.control_median
38.892From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
38.3978From_analysisRNASeq.briggsae.total_over_all_stages.control_median
41.6226From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (27)
ParalogWBGene00035433Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domain: Rubisco LSMT, substrate-binding domain superfamily. Is an ortholog of C. elegans set-27.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG09838
Corresponding_CDS_historyCBG09838:bp194
CBG09838:bp255
Corresponding_transcriptCBG09838.1
Other_sequence (16)
Experimental_infoExpr_patternExpr1056924
Microarray_resultsGPL8303_CB6_WBGene00031354_A
GPL14143_CBG09838_133-192_0.864_39_B
GPL14143_CBG09838_850-909_0.519_251_A
GPL14143_CBG09838_1397-1456_0.965_1_C
MethodGene