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WormBase Tree Display for Gene: WBGene00031394

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Name Class

WBGene00031394SMapS_parentSequencecb25.fpc2234
IdentityVersion2
NameCGC_nameCbr-vps-29From_analysisInferred_from_orthology
Sequence_nameCBG09881
Molecular_nameCBG09881a
CBG09881a.1
CBP34617
CBG09881b
CBP40176
CBG09881b.1
Other_nameCBG_09881Accession_evidenceNDBHE601459
Public_nameCbr-vps-29
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:01WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-vps-29
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvps
RNASeq_FPKMWBls:000000241.4307From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
49.7379From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
61.4737From_analysisRNASeq.briggsae.WBls:0000002.control_mean
93.2525From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
61.1656From_analysisRNASeq.briggsae.WBls:0000002.control_median
64.2536From_analysisRNASeq.briggsae.WBls:0000002.control_mean
72.5933From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003100.799From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
108.395From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
93.2024From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
100.189From_analysisRNASeq.briggsae.WBls:0000003.control_mean
98.9691From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000485.7845From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
87.3307From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
88.877From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
78.1478From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
78.8765From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
85.677From_analysisRNASeq.briggsae.WBls:0000004.control_mean
96.6991From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002720.0592From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.75508From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
49.5168From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
7.90557From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
18.4751From_analysisRNASeq.briggsae.WBls:0000027.control_median
22.3055From_analysisRNASeq.briggsae.WBls:0000027.control_mean
29.0446From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003538.4853From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003812.1534From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
36.2618From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
37.1995From_analysisRNASeq.briggsae.WBls:0000038.control_median
38.1371From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
43.194From_analysisRNASeq.briggsae.WBls:0000038.control_mean
86.2237From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004149.1645From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
77.4214From_analysisRNASeq.briggsae.WBls:0000041.control_mean
85.5921From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
86.434From_analysisRNASeq.briggsae.WBls:0000041.control_median
87.2758From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
87.6531From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
62.764From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
70.0238From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
73.7456From_analysisRNASeq.briggsae.WBls:0000041.control_mean
77.808From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006333.4263From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
37.1901From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
37.5616From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
42.2799From_analysisRNASeq.briggsae.WBls:0000063.control_mean
44.7192From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
58.5021From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
39.8466From_analysisRNASeq.briggsae.WBls:0000063.control_median
42.1316From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
42.2551From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010147.6662From_analysisRNASeq.briggsae.total_over_all_stages.control_median
53.3097From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
49.6273From_analysisRNASeq.briggsae.total_over_all_stages.control_median
57.2429From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00134905
00134906
Ortholog (27)
Structured_descriptionAutomated_descriptionPredicted to be involved in retrograde transport, endosome to Golgi. Predicted to be part of retromer complex. Is an ortholog of C. elegans vps-29.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG09881a
CBG09881b
Corresponding_CDS_historyCBG09881:bp194
Corresponding_transcriptCBG09881a.1
CBG09881b.1
Other_sequence (46)
Experimental_infoExpr_patternExpr1069703
Microarray_resultsGPL8303_CB6_WBGene00031394_A
GPL8303_CB6_WBGene00031394_B
GPL14143_CBG09881_196-255_0.914_9_B
GPL14143_CBG09881_319-378_0.938_2_A
GPL14143_CBG09881_498-557_0.933_5_C
MethodGene