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WormBase Tree Display for Gene: WBGene00031425

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Name Class

WBGene00031425SMapS_parentSequencecb25.fpc2234
IdentityVersion1
NameSequence_nameCBG09922
Molecular_nameCBG09922
CBG09922.1
CBP40885
Other_nameCBG_09922Accession_evidenceNDBHE601459
Public_nameCBG09922
DB_infoDatabaseNDBlocus_tagCBG_09922
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:01WBPerson1971EventImportedInitial conversion from brigace
StatusLive
Gene_infoBiotypeSO:0001217
AlleleWBVar00001669
RNASeq_FPKMWBls:00000020.443904From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
0.575971From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
1.28144From_analysisRNASeq.briggsae.WBls:0000002.control_mean
2.82445From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
0.798791From_analysisRNASeq.briggsae.WBls:0000002.control_median
1.02161From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
1.21648From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000041.99544From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
2.58246From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
3.16949From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
1.73338From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
1.84307From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
2.27285From_analysisRNASeq.briggsae.WBls:0000004.control_mean
2.62287From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.346913From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.04074From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
0From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.151555From_analysisRNASeq.briggsae.WBls:0000027.control_median
0.303111From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
0.335963From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000350.22215From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.312266From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
0.365248From_analysisRNASeq.briggsae.WBls:0000038.control_median
0.41823From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
0.454051From_analysisRNASeq.briggsae.WBls:0000038.control_mean
1.08571From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:00000411.1276From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
1.27771From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
1.43942From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.56205From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.60114From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
2.24177From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.826165From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
1.44741From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.61008From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.111597From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.136594From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0.137554From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.143308From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.296272From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.139951From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.168187From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.32135From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001010.443904From_analysisRNASeq.briggsae.total_over_all_stages.control_median
0.929852From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
0.672785From_analysisRNASeq.briggsae.total_over_all_stages.control_median
0.980194From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Contained_in_operonCBOPA0317
OrthologWBGene00007322Caenorhabditis elegansFrom_analysisHillier-set
OrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00129268Caenorhabditis japonicaFrom_analysisOMA
CSP29.g14875Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP39.g5850Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g8021Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cni-C05B5.5Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp5_scaffold_00571.g13017Caenorhabditis sinicaFrom_analysisWormBase-Compara
Sp34_30258300Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g8762Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs affected by Cbr-spr-4 based on RNA-seq studies. Is predicted to encode a protein with the following domains: F-box domain and F-box-like domain superfamily. Is an ortholog of C. elegans C05B5.5.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG09922
Corresponding_CDS_historyCBG09922:bp194
CBG09922:bp255
Corresponding_transcriptCBG09922.1
Experimental_infoExpr_patternExpr1067061
Microarray_resultsGPL8303_CB6_WBGene00031425_A
GPL8303_CB6_WBGene00031425_B
GPL14143_CBG09922_298-357_0.865_15_A
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_upregulated
MethodGene