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WormBase Tree Display for Gene: WBGene00031461

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Name Class

WBGene00031461SMapS_parentSequencecb25.fpc2234
IdentityVersion2
NameCGC_nameCbr-sqv-3From_analysisInferred_from_orthology
Sequence_nameCBG09970
Molecular_nameCBG09970
CBG09970.1
CBP25573
Other_nameCBG_09970Accession_evidenceNDBHE601459
Public_nameCbr-sqv-3
DB_infoDatabaseNDBlocus_tagCBG_09970
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:01WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-sqv-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsqv
RNASeq_FPKMWBls:000000214.4067From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
15.5438From_analysisRNASeq.briggsae.WBls:0000002.control_mean
23.4919From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
8.73274From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
16.6621From_analysisRNASeq.briggsae.WBls:0000002.control_mean
17.212From_analysisRNASeq.briggsae.WBls:0000002.control_median
20.0172From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000327.2179From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
27.6343From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
28.0506From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
26.7396From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
27.336From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000415.3395From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
15.6448From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
15.9502From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
12.6448From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
14.0622From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
15.3912From_analysisRNASeq.briggsae.WBls:0000004.control_mean
18.9592From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.201222From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.955104From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
10.115From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.75711From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.87765From_analysisRNASeq.briggsae.WBls:0000027.control_median
4.01788From_analysisRNASeq.briggsae.WBls:0000027.control_mean
4.80019From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000354.75485From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.9481From_analysisRNASeq.briggsae.WBls:0000038.control_mean
29.6438From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
3.23517From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
5.13406From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
5.45674From_analysisRNASeq.briggsae.WBls:0000038.control_median
5.77941From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:000004129.0985From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
29.6177From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
31.9481From_analysisRNASeq.briggsae.WBls:0000041.control_median
32.1759From_analysisRNASeq.briggsae.WBls:0000041.control_mean
34.2785From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
35.709From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
32.5011From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
32.8475From_analysisRNASeq.briggsae.WBls:0000041.control_mean
33.3898From_analysisRNASeq.briggsae.WBls:0000041.control_median
35.8801From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006313.2136From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
14.9671From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
17.5478From_analysisRNASeq.briggsae.WBls:0000063.control_mean
18.6126From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
18.9791From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
21.9664From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
14.4558From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
16.7899From_analysisRNASeq.briggsae.WBls:0000063.control_median
17.0324From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010114.4067From_analysisRNASeq.briggsae.total_over_all_stages.control_median
15.1565From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
14.7114From_analysisRNASeq.briggsae.total_over_all_stages.control_median
16.3053From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00134947
00134948
Ortholog (29)
ParalogWBGene00025850Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040787Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable glycosyltransferase activity. Predicted to be involved in carbohydrate metabolic process. Is an ortholog of C. elegans sqv-3. In C. elegans, sqv-3 is involved in several processes, including egg-laying behavior; positive regulation of axon regeneration; and proteoglycan biosynthetic process.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG09970
Corresponding_CDS_historyCBG09970:bp194
Corresponding_transcriptCBG09970.1
Other_sequence (24)
Experimental_infoExpr_patternExpr1055259
Microarray_resultsGPL8303_CB6_WBGene00031461_A
GPL8303_CB6_WBGene00031461_B
GPL8303_CB6_WBGene00031461_C
GPL14143_CBG09970_500-559_0.940_4_B
GPL14143_CBG09970_605-664_0.933_5_C
GPL14143_CBG09970_813-872_0.924_16_A
MethodGene