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WormBase Tree Display for Gene: WBGene00031475

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Name Class

WBGene00031475SMapS_parentSequencecb25.fpc2234
IdentityVersion2
NameCGC_nameCbr-panl-3From_analysisInferred_from_orthology
Sequence_nameCBG09986
Molecular_nameCBG09986a
CBG09986a.1
CBP34353
CBG09986b
CBP41879
CBG09986b.1
Other_nameCBG_09986Accession_evidenceNDBHE601459
Public_nameCbr-panl-3
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:01WBPerson1971EventImportedInitial conversion from brigace
225 Nov 2011 15:07:57WBPerson2970Name_changeCGC_nameCbr-panl-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpanl
RNASeq_FPKMWBls:000000225.2906From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
29.9072From_analysisRNASeq.briggsae.WBls:0000002.control_mean
31.8782From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
32.5529From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
31.7725From_analysisRNASeq.briggsae.WBls:0000002.control_mean
32.2155From_analysisRNASeq.briggsae.WBls:0000002.control_median
37.3684From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003102.389From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
109.351From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
95.4279From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
106.582From_analysisRNASeq.briggsae.WBls:0000003.control_mean
114.966From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000461.2965From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
61.8299From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
62.3633From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
61.563From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
64.095From_analysisRNASeq.briggsae.WBls:0000004.control_mean
64.4348From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
70.8172From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002712.048From_analysisRNASeq.briggsae.WBls:0000027.control_mean
27.0051From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.01628From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
6.12269From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
11.7114From_analysisRNASeq.briggsae.WBls:0000027.control_median
13.3611From_analysisRNASeq.briggsae.WBls:0000027.control_mean
17.3002From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003520.5485From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.9722From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
19.5053From_analysisRNASeq.briggsae.WBls:0000038.control_mean
20.8713From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
21.5668From_analysisRNASeq.briggsae.WBls:0000038.control_median
22.2623From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
23.9153From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:000004132.498From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
54.483From_analysisRNASeq.briggsae.WBls:0000041.control_mean
59.9457From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
60.9845From_analysisRNASeq.briggsae.WBls:0000041.control_median
62.0232From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
63.465From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
37.6667From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
38.9651From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
49.0939From_analysisRNASeq.briggsae.WBls:0000041.control_mean
49.4554From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006332.5903From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
34.7342From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
34.8323From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
37.2349From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
37.9947From_analysisRNASeq.briggsae.WBls:0000063.control_mean
50.5819From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
26.7286From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
34.7832From_analysisRNASeq.briggsae.WBls:0000063.control_median
36.117From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010131.8782From_analysisRNASeq.briggsae.total_over_all_stages.control_median
36.3734From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
32.5716From_analysisRNASeq.briggsae.total_over_all_stages.control_median
40.122From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00134962
00134963
00134964
00134965
Ortholog (32)
Structured_descriptionAutomated_descriptionPredicted to enable RNA binding activity. Predicted to be involved in mRNA processing and nuclear-transcribed mRNA poly(A) tail shortening. Predicted to be part of PAN complex. Is an ortholog of C. elegans panl-3. In C. elegans, panl-3 is involved in reproduction.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG09986a
CBG09986b
Corresponding_CDS_historyCBG09986:bp194
Corresponding_transcriptCBG09986a.1
CBG09986b.1
Other_sequence (19)
Experimental_infoExpr_patternExpr1068113
Microarray_resultsGPL8303_CB6_WBGene00031475_A
GPL8303_CB6_WBGene00031475_B
GPL14143_CBG09986_1237-1296_0.911_22_C
GPL14143_CBG09986_1708-1767_0.924_10_B
GPL14143_CBG09986_1792-1851_0.927_8_A
MethodGene