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WormBase Tree Display for Gene: WBGene00031541

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Name Class

WBGene00031541SMapS_parentSequencecb25.fpc2234
IdentityVersion1
NameSequence_nameCBG10060
Molecular_nameCBG10060a
CBG10060a.1
CBP42725
CBG10060b
CBP40664
CBG10060b.1
Other_nameCBG_10060Accession_evidenceNDBHE601459
Public_nameCBG10060
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:01WBPerson1971EventImportedInitial conversion from brigace
StatusLive
Gene_infoBiotypeSO:0001217
AlleleWBVar00115531
WBVar00115532
WBVar00115533
WBVar00115527
WBVar00115528
WBVar00115534
WBVar00115529
WBVar00115535
WBVar00115530
RNASeq_FPKMWBls:000000210.8851From_analysisRNASeq.briggsae.WBls:0000002.control_mean
11.4358From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
16.3802From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
4.83941From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
11.5297From_analysisRNASeq.briggsae.WBls:0000002.control_mean
12.4496From_analysisRNASeq.briggsae.WBls:0000002.control_median
13.4635From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000341.2883From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
41.5746From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
41.8609From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
43.888From_analysisRNASeq.briggsae.WBls:0000003.control_mean
48.5148From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000426.2451From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
26.728From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
27.2109From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
24.9661From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
26.6327From_analysisRNASeq.briggsae.WBls:0000004.control_mean
26.7886From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
27.9528From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.051788From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.24643From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
2.26511From_analysisRNASeq.briggsae.WBls:0000027.control_mean
6.49712From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
0.76946From_analysisRNASeq.briggsae.WBls:0000027.control_median
1.29249From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
2.02196From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000351.74144From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.357726From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
1.52657From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
1.60114From_analysisRNASeq.briggsae.WBls:0000038.control_median
1.6757From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
3.32997From_analysisRNASeq.briggsae.WBls:0000038.control_mean
9.75988From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004125.3982From_analysisRNASeq.briggsae.WBls:0000041.control_mean
29.1273From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
31.372From_analysisRNASeq.briggsae.WBls:0000041.control_median
33.6167From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
35.2012From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
3.64775From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
18.2253From_analysisRNASeq.briggsae.WBls:0000041.control_median
19.3071From_analysisRNASeq.briggsae.WBls:0000041.control_mean
6.92642From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
7.32337From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006311.3719From_analysisRNASeq.briggsae.WBls:0000063.control_mean
20.7663From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
7.73401From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
9.0923From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
9.39719From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
9.86988From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
11.0283From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
11.3147From_analysisRNASeq.briggsae.WBls:0000063.control_mean
9.63354From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:000010112.572From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
7.73401From_analysisRNASeq.briggsae.total_over_all_stages.control_median
14.0222From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
9.24475From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00135058
00135059
00135060
OrthologWBGene00014220Caenorhabditis elegansFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WBGene00112188Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00055077Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WBGene00185019Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WBGene00129372Caenorhabditis japonicaFrom_analysisInparanoid_8
Cni-ZK1098.3Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp5_scaffold_00327.g9477Caenorhabditis sinicaFrom_analysisWormBase-Compara
ParalogWBGene00031539Caenorhabditis briggsaeFrom_analysisInparanoid_8
WBGene00026000Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00038998Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00039819Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable 3'-5' exonuclease activity and nucleic acid binding activity. Predicted to be involved in nucleobase-containing compound metabolic process. Is an ortholog of C. elegans ZK1098.3.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG10060a
CBG10060b
Corresponding_CDS_historyCBG10060:bp194
CBG10060:bp255
Corresponding_transcriptCBG10060a.1
CBG10060b.1
Experimental_infoExpr_patternExpr1064400
Microarray_resultsGPL8303_CB6_WBGene00031541_A
GPL8303_CB6_WBGene00031541_B
GPL14143_CBG10060_1826-1885_0.911_3_C
GPL14143_CBG10060_2174-2233_0.886_17_A
GPL14143_CBG10060_2370-2429_0.790_116_B
MethodGene