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WormBase Tree Display for Gene: WBGene00031551

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Name Class

WBGene00031551SMapS_parentSequencecb25.fpc2234
IdentityVersion2
NameCGC_nameCbr-sod-4From_analysisInferred_from_orthology
Sequence_nameCBG10072
Molecular_nameCBG10072a
CBG10072a.1
CBP42959
CBG10072b
CBP43728
CBG10072b.1
Other_nameCBG_10072Accession_evidenceNDBHE601459
Public_nameCbr-sod-4
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:01WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-sod-4
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsod
RNASeq_FPKMWBls:000000214.8933From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
17.998From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
19.7511From_analysisRNASeq.briggsae.WBls:0000002.control_mean
26.362From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
14.6199From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
16.4457From_analysisRNASeq.briggsae.WBls:0000002.control_median
18.4683From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000031.17544From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
1.69313From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
2.21081From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
2.12169From_analysisRNASeq.briggsae.WBls:0000003.control_mean
2.97882From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000046.00635From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
7.6322From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
9.25805From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
10.4575From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
6.47389From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
6.74832From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
7.78882From_analysisRNASeq.briggsae.WBls:0000004.control_mean
WBls:0000024 (12)
WBls:00000270.173017From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
10.0798From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.63726From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
28.4291From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
12.0553From_analysisRNASeq.briggsae.WBls:0000027.control_mean
17.9819From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
9.80958From_analysisRNASeq.briggsae.WBls:0000027.control_median
WBls:000003519.3426From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003814.9121From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
17.1437From_analysisRNASeq.briggsae.WBls:0000038.control_median
17.965From_analysisRNASeq.briggsae.WBls:0000038.control_mean
19.3753From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
33.4468From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
4.12565From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004110.0839From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
11.1744From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
12.2004From_analysisRNASeq.briggsae.WBls:0000041.control_median
13.2265From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
15.4064From_analysisRNASeq.briggsae.WBls:0000041.control_mean
27.1407From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
20.1836From_analysisRNASeq.briggsae.WBls:0000041.control_median
24.0786From_analysisRNASeq.briggsae.WBls:0000041.control_mean
27.8297From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
55.0165From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000633.40287From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
3.59285From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
4.34409From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
4.50502From_analysisRNASeq.briggsae.WBls:0000063.control_mean
4.71741From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
6.46787From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
4.53075From_analysisRNASeq.briggsae.WBls:0000063.control_median
5.28057From_analysisRNASeq.briggsae.WBls:0000063.control_mean
9.15836From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010111.1744From_analysisRNASeq.briggsae.total_over_all_stages.control_median
13.9155From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
10.816From_analysisRNASeq.briggsae.total_over_all_stages.control_median
14.6004From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00135071
00135072
00135073
Ortholog (24)
ParalogWBGene00023778Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032360Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable copper ion binding activity. Predicted to be involved in superoxide metabolic process. Is an ortholog of C. elegans sod-4. In C. elegans, sod-4 is involved in superoxide metabolic process.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG10072a
CBG10072b
Corresponding_CDS_historyCBG10072:bp194
CBG10072:bp255
Corresponding_transcriptCBG10072a.1
CBG10072b.1
Other_sequence (51)
Experimental_infoExpr_patternExpr1057902
Microarray_resultsGPL8303_CB6_WBGene00031551_A
GPL14143_CBG10072_267-326_0.932_5_A
GPL14143_CBG10072_418-477_0.883_33_B
GPL14143_CBG10072_498-557_0.963_1_C
MethodGene