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WormBase Tree Display for Gene: WBGene00031608

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Name Class

WBGene00031608SMapS_parentSequencecb25.fpc2234
IdentityVersion2
NameCGC_nameCbr-clip-1From_analysisInferred_from_orthology
Sequence_nameCBG10142
Molecular_nameCBG10142a
CBG10142a.1
CBP43711
CBG10142b
CBP47283
CBG10142c
CBP39822
CBG10142b.1
CBG10142c.1
Other_nameCBG_10142Accession_evidenceNDBHE601459
Public_nameCbr-clip-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:01WBPerson1971EventImportedInitial conversion from brigace
211 Nov 2013 11:33:32WBPerson2970Name_changeCGC_nameCbr-clip-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classclip
AlleleWBVar00115579
WBVar00007199
WBVar00115580
WBVar00115581
WBVar00115582
WBVar00007204
WBVar00007209
WBVar00115578
RNASeq_FPKMWBls:000000215.1174From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
15.6054From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
16.9649From_analysisRNASeq.briggsae.WBls:0000002.control_mean
20.1718From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
14.3497From_analysisRNASeq.briggsae.WBls:0000002.control_mean
15.3614From_analysisRNASeq.briggsae.WBls:0000002.control_median
6.50408From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000030.057446From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
3.11551From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
6.17357From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
3.41504From_analysisRNASeq.briggsae.WBls:0000003.control_mean
4.01411From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000423.8944From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
24.6761From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
25.4577From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
23.2737From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
25.0137From_analysisRNASeq.briggsae.WBls:0000004.control_mean
25.7033From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
26.7395From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002713.9554From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.82432From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
32.6635From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
7.37839From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
20.021From_analysisRNASeq.briggsae.WBls:0000027.control_median
21.3161From_analysisRNASeq.briggsae.WBls:0000027.control_mean
43.3983From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003529.9609From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003813.9527From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
16.0516From_analysisRNASeq.briggsae.WBls:0000038.control_median
18.1506From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
18.5144From_analysisRNASeq.briggsae.WBls:0000038.control_mean
37.8167From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
4.13768From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004112.0866From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
3.93405From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
4.02021From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
4.78918From_analysisRNASeq.briggsae.WBls:0000041.control_median
5.55814From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
6.39975From_analysisRNASeq.briggsae.WBls:0000041.control_mean
13.1647From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
15.6547From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
8.82237From_analysisRNASeq.briggsae.WBls:0000041.control_median
9.06973From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:00000633.3363From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
3.49629From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
3.59132From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
4.45779From_analysisRNASeq.briggsae.WBls:0000063.control_mean
4.98858From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
6.87646From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
4.28995From_analysisRNASeq.briggsae.WBls:0000063.control_median
5.02717From_analysisRNASeq.briggsae.WBls:0000063.control_mean
7.87409From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010112.0866From_analysisRNASeq.briggsae.total_over_all_stages.control_median
15.084From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
13.5587From_analysisRNASeq.briggsae.total_over_all_stages.control_median
15.8884From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Contained_in_operonCBOPA0332
Ortholog (32)
ParalogWBGene00028314Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs an ortholog of C. elegans clip-1. In C. elegans, clip-1 is involved in nucleus localization and nucleus organization.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG10142a
CBG10142b
CBG10142c
Corresponding_CDS_historyCBG10142:bp194
CBG10142:bp255
Corresponding_transcriptCBG10142a.1
CBG10142b.1
CBG10142c.1
Other_sequence (52)
Experimental_infoExpr_patternExpr1061603
Microarray_resultsGPL8303_CB6_WBGene00031608_A
GPL8303_CB6_WBGene00031608_B
GPL14143_CBG10142_363-422_0.643_263_B
GPL14143_CBG10142_567-626_0.714_190_C
GPL14143_CBG10142_2773-2832_0.950_1_A
MethodGene